Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 1e-14 seq11 86.0 7e-12 >seq15 Length=10642048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | ||||| ||||| |||||||| ||||| || |||||||| Sbjct 6220415 GTAAAGATGTATCGAGGACTGGCAGCATCTTTGCCACCATGCAGCCTTGTACCAAACTGC 6220356 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 || ||||| |||||||| ||||||||| ||| || || |||||||||| Sbjct 6220355 CCGAGGGGCTGCAGGAGGTTAAGGTTGTTGCTGCCGACAAAGTTCTGAGCCA 6220304 >seq11 Length=41528230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||| |||||||| || || | | || |||||||| Sbjct 20937965 GTGAAGATGTAACGGGGACTGGCAGCATCCTTTCCTCCATTAATTCTGGTACCAAACTGG 20938024 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| || | ||| | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 20938025 CCAAGTGGTTGGAGAATGTTGATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAGTTCACA 20938084 Query 152149 ATCGT 152153 || || Sbjct 20938085 ATGGT 20938089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202825774800