Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 5e-14 seq3 91.5 2e-13 seq22 87.8 2e-12 seq11 86.0 7e-12 >seq19 Length=9910484 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || ||||| || || || |||||||||||| | || Sbjct 3882491 ATGCAGATCTTTGTGAAAACTCTGACTGGCAAAACCATCACCCTTGAGGTTGAGCCCAGT 3882432 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 || | ||| | ||| |||||||||| |||||||| ||||| || | |||| Sbjct 3882431 GACACCATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTAATCCT 3882381 >seq3 Length=56798892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || | || ||||||| ||| |||| || ||||||||||| | |||||| Sbjct 12782472 ACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGC 12782531 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| |||||| ||||| |||||||| ||| |||| Sbjct 12782532 TCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTGAGACT 12782591 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG 81110 || ||| |||| ||| | | | ||||| ||||||||||| Sbjct 12782592 CGATGATCGCGTACCACAGTTGCTGTGCCTTCACCACCTTGCG 12782634 >seq22 Length=11620783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 3897320 ATGCAGATCTTTGTCAAGACTCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3897261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | ||| | || | ||||| || || |||||||| ||||| || ||||| || Sbjct 3897260 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGA 3897205 >seq11 Length=41528230 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | |||||||||||||| || || ||| | ||| | ||| | ||| Sbjct 20938089 ACCATTGTGAACTTGGCTCAGAACTTTGTGGGAAGCAACAACATCAACATTCTCCAACCA 20938030 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| | | || || ||||||||||| || ||||||||||| Sbjct 20938029 CTTGGCCAGTTTGGTACCAGAATTAATGGAGGAAAGGATGCTGCCAGTCCCCGTTACATC 20937970 Query 32245 TTCAC 32249 ||||| Sbjct 20937969 TTCAC 20937965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296669777120