Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 5e-15 >seq18 Length=15682605 Score = 96.9 bits (106), Expect = 5e-15 Identities = 247/366 (67%), Gaps = 20/366 (5%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 |||||||||| || || | ||||| || | |||| | ||| | | | ||||||| Sbjct 13885680 CCCCTGAGCCCAGAGGAAGAGGAGTTCCCGCTGGCCTTC---ATCCTCACCGTCCACAAG 13885736 Query 13731 ATC---GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 | ||||||||| ||| || || ||||||||||||||||| |||||| | |||||| Sbjct 13885737 GACCTGGAGATGTTCCTGCGGCTGCTCAGGGCCATCTACGCCCCACAGAACGTGTACTGC 13885796 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGAC-GAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 | ||||| ||| |||| || || | || | || | |||| | | | | | | Sbjct 13885797 ATTCACGTCGACAGGAAGT-CGCCGCCGGACTACAAGGCCGCCGTCGCACGCCTGGGCCG 13885855 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCC-CACCGGCTGCACGACGTGGTGTAC---GGCTCCT 13902 ||||||||| ||||| ||||||| | || | | | |||||| ||| || | || Sbjct 13885856 GTGCTTCCCCAACGTCTTCCTGGCCTCCGCGACCG-AGGACGTGACCTACGGGGGGTTCT 13885914 Query 13903 GGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAA 13960 || | ||||||||||| || ||||||| |||||| || | |||||||| Sbjct 13885915 CCAGGC---TGCAGGCCGACATCCACTGCATGAGAGACCTGCTGAAG--TCCCCCGTTCC 13885969 Query 13961 GTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGAT 14020 |||| | | |||||| ||||| ||||||||| | ||| |||| |||| | Sbjct 13885970 CTGGAAGAGGGTCGCCAACCTCTGCGGCCAGGACTTCCCCACCCAGAGCAACTGGGAGCT 13886029 Query 14021 CGTGCG 14026 ||||| Sbjct 13886030 GGTGCG 13886035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658723340853760