Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq9 141 8e-29 seq2 96.9 3e-15 >seq9 Length=53241385 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| ||||| |||||||| ||||| || | |||||||| ||||| || || Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || ||||||||||| || || | ||| |||||||| || || | || || | | | Sbjct 31663974 ACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGAC 31663915 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||||||||| |||| |||||| || |||||||||||||| Sbjct 31663914 ACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| || ||||||||||| || || ||||| || || ||||| Sbjct 31662005 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTC 31661946 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || ||| ||||| |||||||| ||||| || | ||| || || || || Sbjct 31661945 ACCTTCCTCTCTGGAGGTAAAGCCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATC 31661886 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || |||||| || ||||| ||||||||||| || || Sbjct 31661885 CCAGATTTTGACTCCCTTCATGGACAGCTCCTTGGAGTTTGTAGAGCC 31661838 >seq2 Length=68575853 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 ||||||||||||||||| || | ||| || |||| | | || ||||||||| | || || Sbjct 13542890 TTAAGCTCCCTGCTGAGCACAATGTTGATTCTGTTTTTGAGGGGTCTATTCCTCTCTGGA 13542949 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCT 110503 ||||||||||| ||||| || ||||| ||||| | ||||||| Sbjct 13542950 ATGGAGAACCAGGTCTTCCTTCCCATGATCACTGCATTCTGCT 13542992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300862625192