Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 1e-13 >seq9 Length=53241385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 42985405 GTGGTGGAGGAGCTGTTTCGGGACGGAGTCAACTGGGGGCGGATTGTCGCTTTCTTCGAG 42985346 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || ||||| ||||| ||||| || | | || | |||| || |||||| Sbjct 42985345 TTCGGCGGGACGATGTGCGTGGAGAGCGTGAACCGGGAGATGACGTCCCAGGTGGACAAC 42985286 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| |||||||| || Sbjct 42985285 ATTGCCAACTGGATGACGGA 42985266 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 ||||| || | ||||| ||||||||||| | || |||||||| | || || || Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| |||| | ||| || | ||||| || | || || || | Sbjct 31663974 ACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGAC 31663915 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || |||||||| | | | |||||| ||||| ||| |||| Sbjct 31663914 ACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414467070934264