Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9 147 2e-30 seq2 91.5 1e-13 >seq9 Length=53241385 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| ||||| |||||||| ||||| || | |||||||| ||||| || ||| Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || ||||||||||| ||||| | ||| ||||||||||| || | || || | | | Sbjct 31663974 ACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGAC 31663915 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||||||||| |||| ||| || || |||||||| ||||| Sbjct 31663914 ACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||| || || ||||| || || ||||| || || || ||| ||| Sbjct 31661983 AAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTCACCTTCCTCTCTGGAGGTAAAG 31661924 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||| ||||| || | ||| || || || |||||||| || || |||||| | Sbjct 31661923 CCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATCCCAGATTTTGACTCCCTTCATG 31661864 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| ||||||||||| || || Sbjct 31661863 GACAGCTCCTTGGAGTTTGTAGAGCC 31661838 >seq2 Length=68575853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 ||||||||||||||||| || | ||| | |||| | | || ||||||||| | || || Sbjct 13542890 TTAAGCTCCCTGCTGAGCACAATGTTGATTCTGTTTTTGAGGGGTCTATTCCTCTCTGGA 13542949 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCT 114386 ||||||||||| ||||| || ||||| ||||| | ||||||| Sbjct 13542950 ATGGAGAACCAGGTCTTCCTTCCCATGATCACTGCATTCTGCT 13542992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153666080436