Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 >seq1 Length=69065196 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||||| ||||| || || || | || ||||| | |||||||| || Sbjct 49401941 TCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCTTC 49401882 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | |||||||||||||| || || || |||||||| || ||||| || Sbjct 49401881 AGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGGCC 49401822 Query 4692 AC 4693 || Sbjct 49401821 AC 49401820 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| |||||| ||||| || || ||||| ||||||||||| || || || || || Sbjct 49401296 GGGTCTTTAATATACGTGTCGATGAGCAGGCTGTACATTTCAGAGTGGATGTTCTCCATG 49401237 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || || || || || || || || | ||||| || |||||||| || | | ||| | | Sbjct 49401236 GCGATTTGGAAGCCATAGAAACAACGGGCTTCAGTCACTTGAACCTCCTGGCTAAAGCAT 49401177 Query 4929 TCTAC 4933 || || Sbjct 49401176 TCCAC 49401172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039575811358