Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq9 138 8e-28 >seq9 Length=53241385 Score = 138 bits (152), Expect = 8e-28 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| ||||| |||||||| ||||| || | |||||||| ||||| || || Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || ||||||||||| || || | ||| |||||||| || || | || |||| | Sbjct 31663974 ACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGAC 31663915 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||||||||| || | |||||| || |||||||||||||| Sbjct 31663914 ACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| |||||||| || |||||||| || || || ||||| || || ||||| Sbjct 31662005 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTC 31661946 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || ||| ||||| |||||||| ||||| || | ||| || || || || Sbjct 31661945 ACCTTCCTCTCTGGAGGTAAAGCCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATC 31661886 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| || || |||||| ||| ||||| ||||||||||| || || Sbjct 31661885 CCAGATTTTGACTCCCTTCATGGACAGCTCCTTGGAGTTTGTAGAGCC 31661838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498526511306