Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq10 170 3e-37 seq21 125 1e-23 >seq10 Length=42345482 Score = 170 bits (188), Expect = 3e-37 Identities = 190/254 (75%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| | | ||| ||||| | |||| || ||| ||||| || Sbjct 486072 TCACCAATGAGGATGAGCCTGGAGGTTTGGAAGATGCGCTCATCGTCCCACTCTGGGTGC 486131 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||| |||| ||||| ||||| | ||| ||||| || |||||||||||||| |||||| Sbjct 486132 TCCTGTCTCAGGACATCACACACTCGGTTATGTTCTCTCAGCCAGATAGTGGCATACATC 486191 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || || |||||||| || || || || || || | | | ||||||| Sbjct 486192 ATGAGCCCTGGCACAAGGCCAAAGGCGTCGTGCCCCACTGCGAATCTGTGCTCTTCGGGC 486251 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| |||||||||||| || ||| | || || |||||||| Sbjct 486252 ACATGAGGAGGGTAGTGCATGTCCACCTGGACGTCCTTCACCAAAGGAGGGTACATTTCG 486311 Query 9472 CCGTCAATCATCTG 9485 || || |||||||| Sbjct 486312 CCATCGATCATCTG 486325 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||||| |||| ||| || |||| || | | || | || || || | ||||| Sbjct 484193 CCCTTGACATTGCGACATACAAGAGTTTGTAGTGAGGCAGTATTCACAATGTCAAACCCA 484252 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || | ||| ||||||||||| || |||||||| | ||||||||||| || |||| Sbjct 484253 ACTTTTCCACCGAAGGTGCTTGGTTTCCAGTATTCTGGGGAGCAGATTGGATTACCCATC 484312 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||| || || || | |||||||||| || | ||| |||| || || ||||| || Sbjct 484313 AGGCCCTTCAGAGAATATGGAGCCCCCATTTCCACCATGGTCTCCCCAAAAATGGCATTA 484372 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || | ||||| || | || || || | |||||||||| || || | |||||| || Sbjct 484373 GGCCTAGGCTTCTCAATCAGCAAACCAGGATACAGCTCCATGGCATCAATGTCTCCATAG 484432 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | |||||||| || || ||||| ||||||| Sbjct 484433 AGCTCTTCTAGTTCGGCCGCCATTTCCTTCTCTCCTG 484469 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9901 AGGAAAGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAAT 9960 || ||| |||||| ||| || | ||| || || || || | || || || || || | Sbjct 487532 AGAAAACTCACCTGCGACTCCCATAGGCGTAGGGCACTCTTTGGGGACTGGTGGAAGTGT 487591 Query 9961 CCTTGCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTT 10020 ||||| |||||| ||||| || || ||||||||||| || ||| || || | | ||| Sbjct 487592 CCTTGTGTAATAAGAGAGGTTTGAAAAAGCTTCCCAACTCTTGTAGTCATAAACTGAGTT 487651 Query 10021 GTATATGGGAGGGCTGTCAATCAAATCGGATCTACCTG 10058 ||| | ||||| || |||||||||| || ||| ||| Sbjct 487652 GTAAGTAGGAGGACTCTCAATCAAATGTGACCTAGCTG 487689 >seq21 Length=15143781 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || |||||||| |||| |||||||| || |||||||| ||||| || || || Sbjct 4328239 CCAATGATGATGAGACGAGCCGTCTGGAATAGCTGCTCGTCGCTCCAGGTGGGGTGCTCC 4328180 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||||| || ||||||| |||||| ||||| |||||||| ||||||||||||| Sbjct 4328179 TTCTTCAGAATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATCAGC 4328120 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 ||||| || | || ||| || |||| || || | ||| | || ||| |||| || Sbjct 4328119 AGCCCTGGGAGCAAGCCGAAGACCTCCTGCCCAATAGCTATCTGCTTGTCCGCGGGAACA 4328060 Query 9415 TCGGGAGGATAGATCATGTGCACCTGG 9441 || || ||| |||||| |||||| Sbjct 4328059 ATGGATGGGTAGCTCATGTTGACCTGG 4328033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716859541191040