Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 3e-14 seq19 84.2 5e-11 >seq22 Length=11620783 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || ||||| || || || || |||||||| |||||||| || ||| Sbjct 3897317 CAGATCTTTGTCAAGACTCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3897260 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 ||||||||||||||||||| ||||| ||||||||||| || |||||||| || Sbjct 3897259 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGA 3897205 >seq19 Length=9910484 Score = 84.2 bits (92), Expect = 5e-11 Identities = 86/109 (79%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||||||||| || || ||||| |||||||| ||||| || || ||| Sbjct 3882488 CAGATCTTTGTGAAAACTCTGACTGGCAAAACCATCACCCTTGAGGTTGA--GCCCAGTG 3882431 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATCC 178029 ||||||||||||| || || ||||||||||| || ||||| ||||| Sbjct 3882430 ACACCATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTAATCC 3882382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701495675644