Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4869 118 1e-21 seq4878 111 2e-19 seq255 87.8 2e-12 >seq4869 Length=19992947 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||||| ||||| || |||||||||||||| || || ||| |||||||| | ||| Sbjct 3229202 CTCCACTCTCTTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 3229261 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| Sbjct 3229262 CTGTTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 3229321 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || |||| ||| |||| | | |||| || Sbjct 3229322 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 3229351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 3226164 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 3226223 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 3226224 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATAGTCT 3226283 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 3226284 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 3226332 >seq4878 Length=25969111 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 24277 CAATAAGTCTTTCTCC 24292 | | | ||| ||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 >seq255 Length=1984256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| || || | || | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||| || || ||||| | Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 24277 C 24277 | Sbjct 640911 C 640911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593685323610240