Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4884 86.0 8e-12 seq4867 86.0 8e-12 >seq4884 Length=26945264 Score = 86.0 bits (94), Expect = 8e-12 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 ||||||||||| ||||| || | |||||| | ||| | ||| ||| | || | | | Sbjct 819224 AACTTCTCGAAATTCCAAGCGATGTCGTTTCTGCAAATGGGACTCCACACGATAAATTTG 819165 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 |||||| ||| || || | ||| ||| || || || | || | |||||| Sbjct 819164 GGGTCGTTCATGAAGGTCATTGGGTCATCGTGTGGGAATGGAAGTTCTCCTTG-AGGAAG 819106 Query 83264 GCGAAGAGCGGATGTGC-CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 ||||||| || || || |||| | ||||| || ||| ||||| |||||| ||| || Sbjct 819105 ACGAAGAGAGGGTGAGCGCCTTTC-CCGTTCACGTCGACGTTCTCCAAGAGCTGAAATTT 819047 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 || || |||| || ||||||||||| | ||||| ||| | |||||| | || || Sbjct 819046 AGGTTCATAGCCATTGCCAGGACGGACATACTTCAAGGACAAAAGGATCTCTTCGTTATG 818987 Query 83383 GGCGTTTTCCT 83393 |||||||| Sbjct 818986 ACAGTTTTCCT 818976 >seq4867 Length=22528368 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 |||| || ||||||||||| || |||||| || || | ||||||||| | | | | Sbjct 5190133 CCTGATGTCCGAACTGGTTGCA-GGGAACGCCCAGAATCACCAGCCCCTGGTCAGCATAG 5190075 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 || | || |||||||||||||| ||||| |||| |||||| | ||||| || ||||| Sbjct 5190074 CGGCTGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACCGTTGTGCCTCAAAGCGACGCC 5190015 Query 83510 ACGTTCTCGATGAGCA 83525 || || || || |||| Sbjct 5190014 ACATTTTCAATAAGCA 5189999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608759602515520