Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4869 149 6e-31 seq4867 140 3e-28 seq4878 86.0 6e-12 >seq4869 Length=19992947 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| ||||| | | | Sbjct 16670553 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 16670612 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | |||||||| ||||| ||| | |||||| Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670672 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| || | ||||| || |||||||||| Sbjct 16670673 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670732 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| ||| |||| ||||||| ||| |||| Sbjct 16670733 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCG 16670767 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || ||||| | | Sbjct 16670325 ATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGT 16670384 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| ||||| ||| | |||||| Sbjct 16670385 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670444 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || |||||||||||||| || | ||||| || |||||||||| Sbjct 16670445 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670504 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| ||| |||| ||||||| ||| |||| | ||||| ||| Sbjct 16670505 ATTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGC 16670552 >seq4867 Length=22528368 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || ||||| |||||||| | || || ||| | | Sbjct 1269001 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGT 1269060 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | ||||| Sbjct 1269061 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 1269119 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || ||||||||||| || | ||||| || ||||||||| Sbjct 1269120 GCAGCGTCTGATCTTCGCCGGTAAACAGCTGGAAGATGGACGCACGCTGTCCGACTACAA 1269179 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || ||||| || |||| Sbjct 1269180 CATCCAGAAGGAGTCCACCCTCCATCTTGTTCTGCG 1269215 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || ||||| || ||||| |||||||| | || || || | Sbjct 1268769 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCC 1268828 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||||| | | | | |||||| || || | ||||| || ||||| || | || Sbjct 1268829 CAGCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGA 1268888 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| || |||||| |||| || | ||||| || |||||| Sbjct 1268889 CCAGCAGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACACTGTCCGACTA 1268948 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || ||||| ||| | ||| | || || || Sbjct 1268949 CAACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGAGGTGG 1268999 >seq4878 Length=25969111 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 116798 AATCT-GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 ||||| ||| ||||| || ||||||| || || ||| | || || || ||||||||||| Sbjct 11650938 AATCTAGGTTGAGCGATTTACTCAGGAAGTCCAAGTGACAGAAGCCCGATGCTTCTACGG 11650997 Query 116857 CTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 || |||||||| ||||| ||| | ||||| |||||||| Sbjct 11650998 TTTCCAGATCGCAATGGAAAACATTCACTCTGAAATGTA 11651036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515187720106880