Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4867 127 2e-24 seq4883 98.7 1e-15 seq4882 98.7 1e-15 seq4880 98.7 1e-15 seq4866 96.9 4e-15 seq112 95.1 1e-14 >seq4867 Length=22528368 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||||| ||| | ||| |||||| || || ||||| || | | Sbjct 1268999 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1268940 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||| ||||| ||||| || || ||||||||||| | || Sbjct 1268939 AGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1268880 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| ||| || |||| || | | |||||||| | || || Sbjct 1268879 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1268820 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGC 43191 || | |||||||| ||||| || |||||||| |||||||| ||||| ||||||| Sbjct 1268819 TCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGC 1268765 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||| | ||| |||||| || || ||||| || | ||| || || | Sbjct 1269216 ACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCC 1269157 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| ||||| ||||| || || ||||||||||| | || | || ||||| Sbjct 1269156 ATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 1269097 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| || | | ||||| || | |||||| || | ||||| Sbjct 1269096 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGAT 1269037 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || |||||||| ||||| ||||| Sbjct 1269036 GGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 >seq4883 Length=37168685 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4094719 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 4094778 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 4094779 ATACTAACGAGGAGTGA 4094795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| |||||||||| ||||||||| ||||| |||||| Sbjct 11038555 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGC-TGACAGGCGCGGATACTTACCACT 11038497 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 11038496 ATACTAACGAGGA 11038484 >seq4882 Length=16759733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 7604753 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 7604812 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 7604813 ATACTAACGAGGAGTGA 7604829 >seq4880 Length=21574968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 60057 AAAAAT---TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| ||||||| || | ||||||||||||| ||||| |||||||||||||||| | Sbjct 18182257 AAAAATGTATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 18182198 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 |||| ||||||||||| ||||||| Sbjct 18182197 TACTGTCCACTATACTAACGAGGAT 18182173 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 18181986 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 18182045 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 18182046 CTATACTAACGAGGA 18182060 >seq4866 Length=17973520 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17394832 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 17394891 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 17394892 ATACTAACGAGGA 17394904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17395569 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 17395628 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 17395629 ATACTAACGAGGAGTG 17395644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 13398604 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 13398545 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 13398544 TACTAACGAGGAGTG 13398530 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTC----CCGCGTGACAGGCGGACATACTCAC 60120 ||||| || ||||||||||||||| |||||| |||||||||||| || ||||| || Sbjct 17384821 TCTCCCCGTCAGGGAATCGAACCCCGGTCTCGCCCCCGCGTGACAGGTGGGGATACTTAC 17384762 Query 60121 CACTATACTACCGAGGATTG 60140 |||||||||| |||||| || Sbjct 17384761 CACTATACTAACGAGGAGTG 17384742 >seq112 Length=35529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 371 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 430 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 431 TACTAACGAGGATTG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571782661944640