Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4869 105 4e-18 seq4867 105 4e-18 >seq4869 Length=19992947 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || || || |||||||| ||||||||||||||||| || | || Sbjct 16670765 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATC 16670706 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || |||| ||||||||| ||| | || || ||||| Sbjct 16670705 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 16670646 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | ||| | | ||||| || | |||||||| Sbjct 16670645 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGT 16670586 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || || || ||||||||||| Sbjct 16670585 CTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || || || |||||||| ||||||||||||||||| || | || Sbjct 16670537 CAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATC 16670478 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || | || ||||||||| ||| | || || ||||| Sbjct 16670477 TTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 16670418 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 16670417 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGT 16670358 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || || ||||||||||||||| Sbjct 16670357 CTTACCAGTTAGGGTCTTGACAAAGATCTGCATC 16670324 >seq4867 Length=22528368 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || || ||||| ||||||||||||||||| || | || Sbjct 1268984 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCT 1268925 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||| || || ||||| || || ||||||||||| || | || |||||||| Sbjct 1268924 TCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1268865 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || || | |||||||| Sbjct 1268864 TGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTC 1268805 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 1268804 TTGCCAGTCAGCGTCTTCACAAAGATCTGCATC 1268772 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||||||| || | || |||| ||| || || ||||| Sbjct 1269191 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAG 1269132 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | || |||||||| ||||| ||| | | Sbjct 1269131 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1269072 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||||| ||||| || || || || || Sbjct 1269071 TCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACG 1269012 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1269011 AAGATCTGCAT 1269001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323052753793280