Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4885 242 3e-59 seq4887 199 3e-46 seq4872 185 6e-42 >seq4885 Length=26102777 Score = 242 bits (268), Expect = 3e-59 Identities = 582/869 (67%), Gaps = 16/869 (2%) Strand=Plus/Plus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 11599588 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATTGTGATCCATGAGAAGATT 11599647 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 11599648 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACGCCTGACAATGTGTACTGTGTTCAT 11599707 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| ||||| | Sbjct 11599708 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGCGTCCTGTCTG 11599767 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || ||||||||||| |||| Sbjct 11599768 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATCTACGCCTCCTGGTCTCGAGTT 11599827 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 11599828 CAAGCGGACTTCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 11599887 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || ||||||||||| ||||| | | ||| Sbjct 11599888 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCCGAAATGGTTCAGATCCTA 11599947 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || |||| || ||||||||||||||||||||| || ||||| ||||| Sbjct 11599948 AAACAACTGAACGGAAAGAACAGTATGGAGTCTGAG---ACTGTAGAGTCTAAAAATTGG 11600004 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT-GAAGGA 108169 |||||| | | | | || || || |||| || | ||| | | | | | | Sbjct 11600005 CGCTGGCAGTCTCATCACGATGTTACGGACAGTGTGATTCGGACC--TATGTTAGTAAGT 11600062 Query 108170 CCCTCCCCCTGATA-ATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAG 108228 | | ||| | ||| | || |||||| |||| ||||| || ||||||| || | | Sbjct 11600063 CACCCCCGCCCATACAGAGCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTTTCAAG-G 11600121 Query 108229 CCTTTGTCCAACATGTC-TTAGA--CAACCCTAAATCCCAAAGA-CTGGTTGAATGGGTC 108284 ||||| | || || ||| | ||| | || | |||| | | ||||||| Sbjct 11600122 AGTTTGTGGATCACATCATTAAAAGCAA--AGAGATTC--AAGATTTCATGGAATGGGCG 11600177 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 |||||||| || || || || || ||| | ||||| || | ||||| || | | Sbjct 11600178 AAAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCGGATGCCTTCAGTA 11600237 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || || || ||| || ||||| | || ||||||| || || || | Sbjct 11600238 CCAGGATCAAACCCTCCAAACAGAAAGTACGAGCAATCGGACATGAACGCAATTGCTCGT 11600297 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || || |||||| ||||| || |||||| | | | ||||| ||||| |||| ||| Sbjct 11600298 CTAGTGAAGTGGAGCTACCATGAAGGAGATCTAAAGAGTGGGGCTCCTTACCCACCATGC 11600357 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 |||| || || | |||| | || ||||| || || |||||| || | |||||| | Sbjct 11600358 ACTGGGATGCACAGACGGGCGGTGTGTATTTATGGAGCTGGGGACTTGAAATGGATTGTG 11600417 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTT 108553 | | || || || |||||||||||||| Sbjct 11600418 AGGCAACACCATCTTTTGGCAAACAAGTT 11600446 Score = 219 bits (242), Expect = 3e-52 Identities = 286/396 (72%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 11592748 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCCATTGTGATCCATGAGAAGATT 11592807 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 11592808 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 11592867 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| ||||| | Sbjct 11592868 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGCGTCCTGTCTG 11592927 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || ||||||||||| |||| Sbjct 11592928 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATATACGCCTCCTGGTCTCGAGTT 11592987 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 11592988 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 11593047 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || || || |||||||| || ||||||||||| ||||| | | ||| Sbjct 11593048 CTCAACACCTGTGGCACTGATTTCCCCATTAAAACCAATGCCGAAATGGTTCAGATCCTA 11593107 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || |||| || ||||||||||||||||||||| Sbjct 11593108 AAACAACTGAACGGAAAGAACAGTATGGAGTCTGAG 11593143 >seq4887 Length=33568646 Score = 199 bits (220), Expect = 3e-46 Identities = 584/890 (66%), Gaps = 21/890 (2%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| |||||| |||| ||||||||| Sbjct 30403877 CTCAGTAAAGAGGAGAGAGATTTCCCCATTGCTTACTCAATGGTGATCCACGAGAAGATT 30403818 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | | ||| | || | ||| | || | |||||||| || Sbjct 30403817 GAGATGTTTGAAAGGCTCTTAAGGGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 30403758 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || ||| || |||| || ||||| || || | ||||||| | |||||| | Sbjct 30403757 GTGGACCAGAGGTCTCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTTTGTCCTGCCTG 30403698 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 | ||||| || ||||||| || ||| ||| | || ||||||||||| |||| Sbjct 30403697 ACTAATGTGTTTGTGGCCAGCAAACTGGAGAATGTGATATACGCCTCCTGGTCTCGAGTT 30403638 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || |||| || | || | |||| ||| | Sbjct 30403637 CAAGCGGACATCAACTGCATGCAGGATCTGCTAAAGTCACCTGTCCAGTGGAGGTATCTG 30403578 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || | || |||||||| || ||||||| || ||| | | | | || Sbjct 30403577 CTCAACACCTGTGGCAATGATTTCCCCATTAAAACCAATGGAGAAATGATTCAGTCTCTA 30403518 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || | |||| || ||||||||| ||||||| ||| || | |||||||| Sbjct 30403517 AAACTCCTGAACGGAAAGAACAGTCTGGAGTCCGAG---ACTGTAAACTCCAAAAAGGTG 30403461 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATG--AAGG 108168 |||||| | || | | | || ||| || | ||| |||| | Sbjct 30403460 CGCTGGCAGTATCATCACAA--TGTTAGAAGTTGTGACTCGGACC-----GATGTTACAA 30403408 Query 108169 ACCCTCCCCCTGATAATTTA----CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 | ||||||| | ||| | || |||||| |||| ||||| || ||||||| || Sbjct 30403407 AGTCTCCCCC-GTCAATACAGAGCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTTTCA 30403349 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGT 108283 ||| ||||| | || |||| | || | | | | || | | ||||||| Sbjct 30403348 AGAGAGTTTGTGGATCACATCTT-CAAAAGCAAAGAGATTCACGATTTCATGGAATGGGA 30403290 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA- 108342 |||||||| || || || || || ||| | ||||| || | ||||| | | | | | Sbjct 30403289 GAAAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCG-GATGCATTCAG 30403231 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 | || || || ||| || |||||| | |||||||||| | || || Sbjct 30403230 TACCAGGATCCAACCCTTCAGACAGAAAGTATGAGCAATCAGACATGAACTCAATTGCTC 30403171 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 | || || |||||| ||||| || |||||| | | | ||||| || || |||| | Sbjct 30403170 GTCTAGTGAAGTGGAGCTACCATGAAGGAGATCTAAAGAGTGGGGCTCCCTACCCACCAT 30403111 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 || |||| | || | |||| | || | || || || |||||| || | |||||| Sbjct 30403110 GCACTGGGGTTCACAGACGGGCAGTGTGTGTCTATGGAGCTGGGGACTTGAAATGGATTG 30403051 Query 108523 TCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 | | | || || || ||||||||||||||||| || || |||||| Sbjct 30403050 TGAGGCAACACCATCTTTTGGCAAACAAGTTTGATCCAGAAGTAGATGAT 30403001 Score = 196 bits (216), Expect = 3e-45 Identities = 577/876 (66%), Gaps = 20/876 (2%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| | | ||||||||||| ||||| |||||| |||||||||||||| Sbjct 13388028 CTCAGTAAAGAGGAGAAATATTTCCCCATTGCTTACTCCATGGTGATCCATGAGAAGATT 13387969 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | ||||| | || | ||| | || | |||||||| || Sbjct 13387968 GAGATGTTTGAAAGGCTCTTAAGAGCCATTTACACTCCTGACAATGTGTACTGTGTTCAT 13387909 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| || || ||| |||| || ||||| || || | ||||||| ||||| | Sbjct 13387908 GTGGACCAGAGGT-CCCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGCGTCCTGTCTG 13387850 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || |||| || || ||| ||| | || ||||||||||| |||| Sbjct 13387849 ACCAACGTGTTTGTGGCAAGCAAACTGGAGAATGTGATCTACGCCTCCTGGTCTCGAGTT 13387790 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || ||||| || | || | |||| ||| | Sbjct 13387789 CAAGCGGACATCAACTGCATGCAGGATCTGCTCAAGTCACCCGTCCAGTGGAGGTATCTG 13387730 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || | || || |||||||| || |||||||| || ||||| | | || Sbjct 13387729 CTCAACACCTG-TGCACTGATTTCCCCATTAA-ACCAATGCTGAAATGGTTCAGATTCTA 13387672 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || |||| || ||||||||| ||||||| |||| || | ||||||||||| Sbjct 13387671 AAACAACTGAACGGAAAGAACAGTTTGGAGTCCGAGG--CCGT-AGAGTCCAAAAAGGTG 13387615 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATG-AAGGA 108169 |||||| | || | | | || || || || | ||| |||| || | Sbjct 13387614 CGCTGGCAGTATCATCACAATGTTACGAACCTTGTGGTTCGGACC-----GATGTTAGTA 13387560 Query 108170 CCCTCCCCCTGATAATTTA----CCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 |||| | |||| | || |||||| |||| ||||| || ||||||| || Sbjct 13387559 AGTCACCCCCGCCAATTCAGAGCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTTTCAA 13387500 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGGTC 108284 ||| ||||| | | |||| | || | | | | |||| | | ||||||| Sbjct 13387499 GAGAGTTTGTGGATTACATCTT-TAAAAGCAAAGAGACTCAAGATTTCATGGAATGGGAG 13387441 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 |||||||| || || || || || ||| | ||||| || | ||||| || | | Sbjct 13387440 AAAGACACATACAGTCCAGATGAGCACATGTGGGCTACGTTACAGCGGATGCCTTCATTA 13387381 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || || || ||| || ||||| | | || ||||||| || || || | Sbjct 13387380 CCAGGATCAAACCCTCCAAACAGAAAGTACGATCTATCGGACATGAACGCAATTGCTCGT 13387321 Query 108405 CTCGTCAAGTGGCAGTA-CCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || || |||||| || | ||| || |||||| | | | ||||| | || |||| || Sbjct 13387320 CTAGTGAAGTGG-AGCAGCCATGAAGGAGATCTAAAGAGTGGGGCTCTCTACCCACCATG 13387262 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | |||| | | | |||| | || | || || || |||||| || | |||||| | Sbjct 13387261 CACTGGGACGTACAGACGGGCAGTGTGTGTCTATGGAGCTGGGGACTTGAAATGGATTTT 13387202 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | | || || || ||||||||||||||||| || Sbjct 13387201 GAGGCAACACCATCTTTTGGCAAACAAGTTTGATCC 13387166 >seq4872 Length=27116566 Score = 185 bits (204), Expect = 6e-42 Identities = 276/392 (70%), Gaps = 0/392 (0%) Strand=Plus/Minus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || |||||||| ||| ||| ||||||||||| ||||| || ||| |||| ||||||||| Sbjct 24302776 CTCAGTAAAGAGGAGAAAGATTTCCCCATTGCTTACTCAATTGTGATCCACGAGAAGATT 24302717 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | |||||| |||| | | ||| | || ||| | || | |||||||| || Sbjct 24302716 GAGATGTTTGAAAGGCTCTTAAGGGCCATTTACATTCCTGACAATGTGTACTGTGTTCAT 24302657 Query 107811 GTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 ||||| |||||| || |||| || ||||| || || | ||||||| | |||||| | Sbjct 24302656 GTGGACCAGAAGTCACCTGAGATCTTTAAAGAAGCAGTTAGGGCCATTGTGTCCTGCCTG 24302597 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 |||| || || ||||||| || ||| ||| | || ||||||||||| |||| Sbjct 24302596 ACCAACGTGTTTGTGGCCAGCAAACTGGAGAATGTGATATACGCCTCCTGGTCTCGAGTT 24302537 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 ||||| ||| | ||||| ||| | || |||| || | || | |||| ||| | Sbjct 24302536 CAAGCGGACATCAACTGCATGCAGGATCTGCTAAAGTCACCTGTCCAGTGGAGGTATCTG 24302477 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 || || || || || | || |||||||| || ||||||| || || | | | | || Sbjct 24302476 CTCAACACCTGTGGCAGTGATTTCCCCATTAAAACCAATGAAGAAATTATTCGGTCTCTA 24302417 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 || | |||| || ||||||||| ||||||| Sbjct 24302416 AAACTCCTGAACGGAAAGAACAGTCTGGAGTC 24302385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348248052756912