Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4869 95.1 9e-15 seq4867 86.0 5e-12 >seq4869 Length=19992947 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| |||||||||||||||| | Sbjct 16670551 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 16670492 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| |||||||| ||| |||| | || || || || ||| Sbjct 16670491 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 16670432 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || || | ||| || | ||| ||||||| |||||| Sbjct 16670431 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACC 16670372 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 |||| ||||||| | || || || | || || ||||| || ||||| | ||||| Sbjct 16670371 TCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCATCTGTAAAC 16670317 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||||| || ||| | |||||||| |||||||| Sbjct 16670749 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 16670690 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| || || || || || ||| | |||||| || || || | | |||| Sbjct 16670689 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTG 16670630 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||| | |||||| || | ||||||| | ||||| ||||| || Sbjct 16670629 ACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAGGTC 16670570 Query 18309 TTTACAAAAATTTGCAT 18325 || || || || ||||| Sbjct 16670569 TTGACGAAGATCTGCAT 16670553 >seq4867 Length=22528368 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || || || || ||||||||||||| || ||| | |||| Sbjct 1268984 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCT 1268925 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| ||||| || || |||| || | || || || || | ||||||||| || Sbjct 1268924 TCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1268865 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||| | |||||| |||| |||||| | Sbjct 1268864 TGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTC 1268805 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 ||||| |||| || || ||||| || ||||| |||| Sbjct 1268804 TTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTA 1268768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379321401529560