Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4867 118 9e-22 seq4869 114 1e-20 >seq4867 Length=22528368 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 1268769 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCC 1268828 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | ||||| | || ||||||||||||| | || || || Sbjct 1268829 CAGCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGA 1268888 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||||||||| || ||||| || |||||||||||||| | | | || || ||| | Sbjct 1268889 CCAGCAGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGA-TGGACGCACACTGTCCGACT 1268947 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || |||||||| || | || || || |||| Sbjct 1268948 ACAACATCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGAGGTGGTA 1269001 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || ||||| | || || ||||| Sbjct 1269001 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGT 1269060 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 1269061 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1269120 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || ||||| || |||||| ||||||| | | | || || ||| || || Sbjct 1269121 CAGCGTCTGATCTTCGCCGGTAAACAGCTGGAAGA-TGGACGCACGCTGTCCGACTACAA 1269179 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || ||||| || || Sbjct 1269180 CATCCAGAAGGAGTCCACCCTCCATCTTGTTCT 1269212 >seq4869 Length=19992947 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||||||||| || |||||| |||| || || || Sbjct 16670552 CATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAG 16670611 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| || ||| | |||||| |||||| | || || |||| Sbjct 16670612 CGACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATTCCCCCTGACC 16670670 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||| | || || || |||||||||||| ||||||| | | | || || ||| || Sbjct 16670671 AGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA-TGGACGCACACTGTCCGACTAC 16670729 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || ||||| || || | |||||||| || | || || || ||| Sbjct 16670730 AACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGAGGAGGT 16670780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||| || || || || || || || | || || ||||||| || |||| Sbjct 3228329 GTGTACTCTACTATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGG 3228388 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || || ||||| | |||||||| |||||||| || ||||| ||||| ||| Sbjct 3228389 TTGCTCTTGCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTCTGTCTGA 3228448 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| ||||| || |||||| Sbjct 3228449 GACTCAATGATGGCATGCCACA 3228470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || || || || Sbjct 16670325 ATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGT 16670384 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||| |||||| | || || |||||| Sbjct 16670385 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670444 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || |||||||||||| ||||||| | | | || || ||| || || Sbjct 16670445 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGA-TGGACGCACACTGTCCGACTACAA 16670503 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || || | |||||||| || | || ||||| || Sbjct 16670504 CATTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGG 16670551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445739163672960