Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4869 122 1e-22 seq4878 114 2e-20 seq255 93.3 5e-14 >seq4869 Length=19992947 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||||| ||||| || |||||||||||||| || || ||| |||||||| | ||| Sbjct 3229202 CTCCACTCTCTTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 3229261 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 |||||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| Sbjct 3229262 CTGTTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 3229321 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || |||| ||| ||||| | | |||| || Sbjct 3229322 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 3229351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 3226164 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 3226223 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 3226224 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATAGTCT 3226283 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 3226284 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 3226332 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| ||||| || | |||| || | | | || | ||| || ||| ||||| Sbjct 3227774 TAGGTTTCATACGGTCCAAGCTCCGCAGCCAGCTCATAGCTGGACTCCAAGGCAGCGTAA 3227833 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || ||||| |||||||||| | || || ||| || || | ||| || || || | Sbjct 3227834 TAGATGGTCTCAAAGATCTGTGTGTTGAGGAGTTGAGCCTCTGCGCTCTCGAAGGGGAAG 3227893 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | |||||| || ||||| || | || ||||||||||||||||| || || || | | Sbjct 3227894 CGCATGAGAATGAAGGCGTCGGCCAGACCCTGAACACCAATACCGATGGGCCTGTGGCGC 3227953 Query 62808 TTATTAGAGATTTCAGC 62824 | || ||| | || || Sbjct 3227954 ATGTTGGAGTTCTCTGC 3227970 >seq4878 Length=25969111 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || |||||||| ||||| || || | ||| | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || ||||||||||||||||| ||||||||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | || |||| |||||| || || |||||||| || ||||||||||| || || Sbjct 11651067 ATCTTTGATGTAGGTATTGATCAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGC 11651008 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 ||||| || |||||||| |||| || || || | || ||||| | |||||| || Sbjct 11651007 GATCTGGAAACCGTAGAAGCATCGGGCTTCTGTCACTTGGACTTCCTGAGTAAATCGCTC 11650948 Query 33962 -TGCTAAATTTTCATTCAC 33979 ||| |||| |||||| Sbjct 11650947 AACCTAGATTTAAATTCAC 11650929 >seq255 Length=1984256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || | |||||||||||||| || || | || | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| | |||| ||| |||||||| || |||||||| ||||| || |||||||| | Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 33724 CAATAAGTCTCTCTCC 33739 | | | || |||||| Sbjct 640911 CTACTAATCGCTCTCC 640926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629779118144640