Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4869 125 7e-24 seq4867 120 3e-22 >seq4869 Length=19992947 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || ||| || ||||| || | ||||| |||||||| || Sbjct 16670749 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCCAGCTGTTTGCC 16670691 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | ||||| || || || |||||||||||||| ||| ||| || Sbjct 16670690 AGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTT 16670631 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| | ||||| ||||| | ||| | |||||||| ||||| || Sbjct 16670630 GACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAGGT 16670571 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 16670570 CTTGACGAAGATCTGCAT 16670553 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| |||||||| || ||| || ||||| || | ||||| |||||||| || Sbjct 16670521 GTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCCAGCTGTTTGCC 16670463 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| | ||||| || || || |||||||||||||| ||| || || Sbjct 16670462 AGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 16670403 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | ||||| ||||||| ||| | ||||| || || | || Sbjct 16670402 CACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGTTAGGGT 16670343 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 16670342 CTTGACAAAGATCTGCAT 16670325 >seq4867 Length=22528368 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||||| ||| | || | || ||||| || || ||||| || || Sbjct 1269231 ATTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1269172 Query 139594 GCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 139652 | || |||| || | ||||| ||||||||||| || |||||||||| ||||| || | Sbjct 1269171 GGACAGCGTGCGTCCA-TCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAG 1269113 Query 139653 GAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 |||| |||||||| ||||| ||| || || | | || | ||||| | || | Sbjct 1269112 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTT 1269053 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| || | |||||||| |||| || |||||||| || |||||| Sbjct 1269052 CCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCATA 1269000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496033690489600