Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4878 95.1 1e-14 >seq4878 Length=25969111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || || ||||| || || || || | ||| ||||| | ||||| || | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||| || || | ||| || || || |||||||| ||||| || ||||||||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 13802 CTATTAGTCGTTCTCCAAACGA 13823 | | | || ||||| || || Sbjct 11651510 CCACCACTCTCTCTCCTAAAGA 11651489 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||| || | | ||| |||||||||||||| |||||||| || || ||||| Sbjct 11651060 ATGTAGGTATTGATCAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGCGATCTGG 11651001 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAA 14035 ||||| || || |||| ||||||| | ||| || ||| ||||||| Sbjct 11651000 AAACCGTAGAAGCATCGGGCTTCTGTCACTTGGACTTCCTGAGTAAA 11650954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478559558224320