Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4878 129 8e-25 seq4869 114 2e-20 seq255 96.9 5e-15 >seq4878 Length=25969111 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || ||||| ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | || |||| |||||| || || |||||||| || ||||||||||| || || Sbjct 11651067 ATCTTTGATGTAGGTATTGATCAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGC 11651008 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 ||||| || |||||||| |||| ||| || || || || ||||| | |||||| || Sbjct 11651007 GATCTGGAAACCGTAGAAGCATCGGGCTTCTGTCACTTGGACTTCCTGAGTAAATCGCTC 11650948 Query 42445 -AGCTAAATTTTCGTTCAC 42462 | ||| |||| ||||| Sbjct 11650947 AACCTAGATTTAAATTCAC 11650929 >seq4869 Length=19992947 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| ||||| || |||||||||||||| || || ||| |||||||| | ||| || Sbjct 3229206 ACTCTCTTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 3229265 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| || Sbjct 3229266 TCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 3229325 Query 72142 TCCAAGTATATGGCCATAACTCCCGG 72167 |||| ||| ||||| | | |||| || Sbjct 3229326 TCCAGGTACATGGCAAAAGCTCCTGG 3229351 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| |||| | || || || |||||||| | Sbjct 3226164 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 3226223 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 3226224 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATAGTCT 3226283 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 71036 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 3226284 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 3226332 >seq255 Length=1984256 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| | |||||||||||||| || || | || | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| | || | |||||||||||||| |||||||| ||||| || || ||||| | Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 42207 CAATAAGTCTCTCTCC 42222 | | | || |||||| Sbjct 640911 CTACTAATCGCTCTCC 640926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098193394880