Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4869 93.3 3e-14 >seq4869 Length=19992947 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||||| ||||| || |||||||| ||| || | | | ||||| | || Sbjct 16670528 ATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTG 16670469 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | ||||| | || ||||| ||||| ||||||||||| || || Sbjct 16670468 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTT 16670409 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||| ||||| || Sbjct 16670408 GGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGT 16670349 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 16670348 TAGGGTCTTGACAAAGATCTGCAT 16670325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||||| ||||| || |||||||| ||| || | | | ||||| | || Sbjct 16670756 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTG 16670697 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||||||||| | |||| | || ||||| ||||| ||||||||||| || || Sbjct 16670696 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTT 16670637 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || ||||| ||||| || || || | ||| ||||| || |||| Sbjct 16670636 TGC-CTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTG 16670578 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 16670577 TCAAGGTCTTGACGAAGATCTGCAT 16670553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157624079608