Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4869 167 5e-36 seq255 104 5e-17 seq4878 102 2e-16 seq1742 91.5 3e-13 >seq4869 Length=19992947 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| || || || ||||||||||| || ||||| Sbjct 16670554 ATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCG 16670495 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || | |||||| || ||||| Sbjct 16670494 GACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGG 16670435 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || ||||| || | ||| || || || || Sbjct 16670434 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCG 16670375 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 16670374 ACCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 >seq255 Length=1984256 Score = 104 bits (114), Expect = 5e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 269121 CTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTT 269180 |||| ||||| | ||||| |||||||| || || ||||| || ||||| || || || | Sbjct 640930 CTTA-GGAGAGCGATTAGTAGCTTTTGCTGCGGTGGAAGGCATCTTCTTCTCTGGATCAT 640872 Query 269181 TTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACG 269240 |||| || |||| ||||||||||||||||| || ||||| ||| | || | ||| || | Sbjct 640871 TTGCTGCCATCTACTGGTTGAAGAAAAGAGGTCTGATGCCCGGACTCACCTACTCCAATG 640812 Query 269241 AATTGATAAGCAGGGACGAAGGTT 269264 || | || ||||| || | ||||| Sbjct 640811 AACTCATCAGCAGAGATG-AGGTT 640789 >seq4878 Length=25969111 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| || || ||||| || |||||||| ||||||||||| Sbjct 11651495 GGAGAGAGAGTGGTGGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 11651554 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 11651555 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTC 11651614 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 11651615 ATCAGCAGAGATGA 11651628 >seq1742 Length=6618 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || ||||| || |||||||| || || ||||| || | ||| ||||| || || ||||| Sbjct 2184 CCCTCTTTGTCTTGAATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 2125 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || |||||||| || | ||||| ||||| |||||||||||| Sbjct 2124 AGGGTGATGGTCTTACCGGTTAAAGTTTTCACAAAGATCTGCATTTTG 2077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151326290796704