Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq4883 136 6e-27 seq4872 127 3e-24 seq4888 107 3e-18 >seq4883 Length=37168685 Score = 136 bits (150), Expect = 6e-27 Identities = 197/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||||||||| || | || || | | ||| | || ||| | |||| ||| |||| || Sbjct 35761765 CCCTTTGACATTATTGCAAACCAAATTCTGCAGAGAGGCAGTGTTGATAATCTCAAAGCC 35761824 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | || || || ||||| ||||||||||| | ||||| || ||| || |||| Sbjct 35761825 CACTTTGCCACCAAATGTGCTTGGTTTCCAGTACTCAGGGGAACAAATGGGATTACCCAT 35761884 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 || |||||||| || | || || |||| ||| | ||| |||| || || ||||| || Sbjct 35761885 AAGTCCTTTGAGTGAGTAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAAATGGCATT 35761944 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 | | | ||| || || |||| | || || || | ||||||||| || | |||||||| Sbjct 35761945 GAGCCTGGGTTTCTCAACCAGCAGACCCGTATAAAGCTCCACAGCGTCTACATCTCCGTA 35762004 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | | ||||| ||||| |||||||||||||||| Sbjct 35762005 CATCTCTTCAAGTTCAGCAGCCATTTCCTTTTCTCCTG 35762042 Score = 132 bits (146), Expect = 7e-26 Identities = 180/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || |||| |||||| || | |||||||||||| |||||| ||| || ||||| || Sbjct 35762989 CCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGCTCC 35763048 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | || | | ||| ||||||| ||||||||| | |||||||| || || ||||||||| Sbjct 35763049 TGCTTTAATATATCACACACTCGGTTGTGTTCTCGCAGCCAGATGGTGGCATACATCATG 35763108 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || ||||| ||||| ||||| ||||| ||||| ||||| | ||| || || | Sbjct 35763109 AGTCCAGGAACCAGTCCAAAGGCCTCGTGACCCACAGCAAAACGTCGGGACTCAGGTATA 35763168 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | ||||| ||| ||||| || || || || |||| | || ||||| | ||||| Sbjct 35763169 TGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCACCA 35763228 Query 9853 TCAATAATCTG 9863 || | || ||| Sbjct 35763229 TCCAGAACCTG 35763239 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || ||||| ||||| | | || ||||| || | | | | Sbjct 35764000 TCACCTGCGACTCCCATTGGTGTTGGGCAATCATTCGCGACAGGAGGCAGCGTACGAGTG 35764059 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||||||||| | |||||||||||| ||| | ||||| || ||| | | Sbjct 35764060 TAGTAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATGTA 35764119 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 || |||||||||||||||| || Sbjct 35764120 GGGGGGCTGTCAATCAAATGGG 35764141 >seq4872 Length=27116566 Score = 127 bits (140), Expect = 3e-24 Identities = 183/254 (72%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||||||| || || | | |||||| ||| || ||||| Sbjct 3679144 TCACCAATCAGGATGAGACGAGTGGTTTGGAAGATTCTTTCGTCGTCCCAGTCGGGATGC 3679203 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| | |||| | ||| | || | ||||||||| | |||||| || || || |||||| Sbjct 3679204 TCTTGCTTCATGATATCACT-ACACGGTTGTGTTCACGGAGCCAAATGGTTGCATACATC 3679262 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTT-TCGGG 9788 || | ||| || ||||| || || ||||| ||||| ||||| | | || || || || Sbjct 3679263 ATCAAACCTGGAACCAGACCGAAGGCCTCATGACCCACAGCAA-ATTTATGTTCCTCCGG 3679321 Query 9789 CACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTC 9848 || | ||||||||| ||| | ||||||||||||||| ||| || || |||| || Sbjct 3679322 GACATGAGGAGGATAGTGCATCTCCACCTGGACATCTTTCACCAGCGGAGGGTACACCTC 3679381 Query 9849 ACCGTCAATAATCT 9862 ||| || | || || Sbjct 3679382 ACCATCCACAACCT 3679395 Score = 113 bits (124), Expect = 6e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || || |||||||| ||||||| | || || || || | | Sbjct 3677627 CAAATCCAACTTTCCCACCAAATGTGCTGGGCATCCAGTATTCAGGAGAACAAATAGCAT 3677686 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||||||||||||||||||| | || || |||| ||| | ||| ||||| || || | Sbjct 3677687 TTCCCATGAGGCCTTTGAGGGAGTAGGGGGCTCCCATCTCCACAATACTCTCCCCAAATA 3677746 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 || ||||| | || || |||| |||||| || | |||| ||| || || || ||| Sbjct 3677747 CAGCATTGGGTCTAGGTTTCTCCA-CAAGAAGGCCAGGATACAGCTCAACCGCATCTATG 3677805 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTA 8980 | ||||| || | | |||||| | || | ||||| |||||||||||| Sbjct 3677806 TGACCGTACAGCTTCTTCAGTTCGTCTGCCAGCTCCTTGTCTCCTGTTTTA 3677856 >seq4888 Length=31417778 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || |||||||| || | | ||||||||||| || || || | ||| ||||||||| Sbjct 726482 CCTATAATGATTAGCCTGGCAGTCTGAAACAGCTGCTCATCCCCCCAGGTCGGATGTTCT 726423 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||||| | ||| ||||| | |||||| || | ||||| | || |||||||| || Sbjct 726422 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 726363 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 ||||| |||| ||| ||||| ||||||| || | |||| || | | || || Sbjct 726362 AGACCCGGCAGCAGTCCAAACACCTCTTGCCCAATGGCCAACTGCTTCTCCGGAGGAACA 726303 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 || || ||| |||| | ||||| ||||| || | |||||||| || ||||| Sbjct 726302 GACGGTGGGTAGCTCATTTTGACCTGCGCATCTAGCACAGTAGGGGGATATATCTCACC 726244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708481509134720