Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4878 129 7e-25 seq4869 122 1e-22 seq255 105 8e-18 >seq4878 Length=25969111 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || ||||| || || |||||||||||||||||||| ||||||||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||||||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | || |||| |||||| || || |||||||| || ||||||||||| || || Sbjct 11651067 ATCTTTGATGTAGGTATTGATCAACAGGCTGTACATTTCAGAGTGAATGTTTTCCATTGC 11651008 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || |||||||| |||| || || || | || ||||| | |||||| || Sbjct 11651007 GATCTGGAAACCGTAGAAGCATCGGGCTTCTGTCACTTGGACTTCCTGAGTAAATCGCTC 11650948 Query 33684 CGCC-AAATTTTCATTCAC 33701 || | |||| |||||| Sbjct 11650947 AACCTAGATTTAAATTCAC 11650929 >seq4869 Length=19992947 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || ||||| ||||| || |||||||||||||| || || ||| |||||||| | ||| Sbjct 3229202 CTCCACTCTCTTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 3229261 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 |||||||| ||||| ||||||||||| || || ||||| | | ||| ||| ||||||| Sbjct 3229262 CTGTTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 3229321 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || |||| ||| ||||| | | |||| || Sbjct 3229322 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 3229351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 3226164 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGAATGT 3226223 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || || || || ||||||||||| | ||||||||||| |||| ||| |||| Sbjct 3226224 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCGATCTGCAGCCATCTTTAAGATAGTCT 3226283 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62230 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 3226284 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 3226332 >seq255 Length=1984256 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| ||||| | |||||||||||||| || || | || | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| | |||| ||| ||||||||||| |||||||| ||||| || |||||||| | Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 33446 CAATAAGTCTCTCTCC 33461 | | | || |||||| Sbjct 640911 CTACTAATCGCTCTCC 640926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909137926080