Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4886 100 2e-16 seq4883 100 2e-16 seq4880 98.7 7e-16 seq4887 96.9 2e-15 seq4870 95.1 8e-15 seq4869 93.3 3e-14 seq4876 84.2 1e-11 >seq4886 Length=30003503 Score = 100 bits (110), Expect = 2e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 5918270 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGTCTCGTGACGGT 5918211 Query 20013 ATTTAGCCTT 20022 |||||||||| Sbjct 5918210 ATTTAGCCTT 5918201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||| |||||||| |||| |||||||| || | | | || |||| | | Sbjct 16216020 AAGCCCATTCCCATGGCTGTGTTTTCACTAGATAGCAGGTGGAGACAGTGGGAATCACAT 16215961 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 16215960 TCATCCATTCATGCGCGTCACTAATTAGATGAC 16215928 >seq4883 Length=37168685 Score = 100 bits (110), Expect = 2e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 35200191 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGTCTCGTGACGGT 35200132 Query 20013 ATTTAGCCTT 20022 |||||||||| Sbjct 35200131 ATTTAGCCTT 35200122 >seq4880 Length=21574968 Score = 98.7 bits (108), Expect = 7e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||| ||| ||| || || Sbjct 17191323 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTCGATTCCAAGAATGAC 17191264 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 17191263 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTAGATGGATTC 17191204 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||||||||||||||| |||||||| || || || || || Sbjct 17191203 ATTCGCAAGTTTGTGCTGTGTCCTGAATGCGACAATCCTGAAACTGA 17191157 >seq4887 Length=33568646 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 12789464 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTACCGGTACTTGTCCTCTATCGGTCTCGT 12789523 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 12789524 GAAGGTATTTAGCCTT 12789539 >seq4870 Length=28600511 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || | || || ||||| ||||||||| || || || Sbjct 3832302 CCAACTAAGTTTTTTGGCTGTGAGTTGGGGGCGCAGACTCAGTTTGATGCTAAGAATGAC 3832361 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| ||||||||| | || || || ||| Sbjct 3832362 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTT 3832421 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || ||||||||||||||||| Sbjct 3832422 ATCCGCAAGTTTGTGCTGTG 3832441 >seq4869 Length=19992947 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | ||||| ||||| ||| | ||| ||| || || || ||||| || || Sbjct 16670780 ACCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 16670721 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | ||||| || ||||| || || | || || || | ||| Sbjct 16670720 CAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 16670661 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||||| || ||| ||| ||||||| | || || | || || Sbjct 16670660 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGAC 16670601 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| || ||||| ||||||||| Sbjct 16670600 CTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 16670552 >seq4876 Length=16505880 Score = 84.2 bits (92), Expect = 1e-11 Identities = 76/96 (79%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||| |||||||||||||||||||||||||||||| || || || || ||||| | Sbjct 5281078 TAAGCTCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAAGGACAGTGGGAATCTTG 5281137 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| | |||| | || ||||| || |||||| Sbjct 5281138 TTCATCCATGCATGTACATCGCTAATAAGGTGACGA 5281173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334927246357928