Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4867 127 2e-24 seq4869 107 2e-18 >seq4867 Length=22528368 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || ||||| || || | || || || || |||||||||| || || Sbjct 1268767 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAG 1268826 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || |||| || || || |||||||| || ||||| || Sbjct 1268827 CCCAGCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCT 1268886 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || || ||||| |||||||| || ||| ||||| | ||||| Sbjct 1268887 GACCAGCAGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACACTGTCCGAC 1268946 Query 22393 TACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| || || || |||||| | ||| Sbjct 1268947 TACAACATCCAGAAGGAGTCCACCCTCCAT 1268976 >seq4869 Length=19992947 Score = 107 bits (118), Expect = 2e-18 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 22198 TAGTTTTATACATTTGT--AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGG 22255 || |||| | |||||| | ||||||| || ||||| || || |||| ||||| || Sbjct 16670302 TATTTTTCTTAATTTGTTTACAGATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCA 16670361 Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| ||||| || || | | || ||| | || || | || || || || |||| Sbjct 16670362 TCACCCTTGAGGTCGAGCCAAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACA 16670421 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 | || || ||||| || || || || | | || ||||| ||||||||| | || ||| Sbjct 16670422 AAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATG 16670481 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| | ||||| ||||||||||| ||||| |||||| | ||| | || |||| Sbjct 16670482 GACGCACACTGTCCGACTACAACATTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCG 16670539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419702995753720