Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4888 98.7 2e-15 seq4873 93.3 9e-14 seq356 93.3 9e-14 seq4872 91.5 3e-13 seq4866 91.5 3e-13 >seq4888 Length=31417778 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||||||||| |||||||| || ||||||||||| || ||||| | ||||| | Sbjct 27667617 CTGCACTCTGATCCTGACTGAAGGAGACTCAGCCAAAACTCTGGCTGTGTCGGGTCTGGG 27667558 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| ||||| | |||||| ||||||| || |||||||| | ||||||||||| Sbjct 27667557 TGTGGTGGGACGTGATCGCTATGGTGTCTTCCCTCTGCGTGGTAAAATCCTCAACGTGCG 27667498 Query 217956 CGATGCCTC 217964 || || || Sbjct 27667497 AGAGGCGTC 27667489 >seq4873 Length=17659128 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 13243192 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 13243133 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 13243132 GCCCCACGTTGGGC 13243119 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 17048605 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 17048546 Query 142112 CCCCGCCAGAGACGC 142126 |||| |||||| || Sbjct 17048545 TCCCGGCAGAGATGC 17048531 >seq356 Length=488916 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 165202 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 165143 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 165142 GCCCCACGTTGGGC 165129 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 169025 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 169084 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 169085 CCCCACGTTGGGC 169097 >seq4872 Length=27116566 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 4488715 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4488656 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 4488655 CCCCACGTTGGGC 4488643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9216128 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9216187 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9216188 CCCCACGTTGGGC 9216200 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 1020990 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 1021049 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 1021050 TCCCGGCAGAGA 1021061 >seq4866 Length=17973520 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 3280255 AGCCCGGCTAGCTCAGTCGGTAGAGCA-TGGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3280197 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | |||| ||| Sbjct 3280196 CCCCACGTTGGGCGGAA 3280180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027772429150808