Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4867 179 7e-40 seq4869 170 4e-37 >seq4867 Length=22528368 Score = 179 bits (198), Expect = 7e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 || |||||| || || || || |||| || | || || |||||||| || |||||||| Sbjct 1269237 ATATTAATTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTT 1269178 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 || ||||| || || | |||||||| | ||| || |||||||| || || | || || Sbjct 1269177 GTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTG 1269118 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGC 68404 ||| || ||||||||||||||||| || ||||| ||||||||| ||| |||||||| Sbjct 1269117 GTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACT 1269058 Query 68405 TGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||| || || | |||||||| || || || |||||||| ||||| |||||||| Sbjct 1269057 TGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 163 bits (180), Expect = 5e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| || || |||||||| || |||||||| || ||||| ||||| | Sbjct 1268990 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGT 1268931 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| ||||| || |||||||| || || | || ||||| || |||||||||||| Sbjct 1268930 CCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 1268871 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| |||||||| ||| |||||||| ||| | || || || | || Sbjct 1268870 TTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCAACCTCAAGAGT 1268812 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || || ||||| || || |||||||| Sbjct 1268811 GATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 >seq4869 Length=19992947 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||| || | ||||||||||| |||||||| || ||||| Sbjct 16670779 CCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 16670720 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | ||| || || || || || || || || ||||| || ||| Sbjct 16670719 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16670660 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || |||||||||||||| ||| |||||||| || || || Sbjct 16670659 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACC 16670600 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||||||||| |||||||| Sbjct 16670599 TCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||| || | ||||||||||| || ||||| || ||||| Sbjct 16670551 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 16670492 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | ||| || || || || || | || || ||||| || ||| Sbjct 16670491 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 16670432 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| ||||| || ||| |||||||| || || || Sbjct 16670431 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACC 16670372 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || ||||||||||| || |||||||| Sbjct 16670371 TCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921566088871360