Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4867 122 7e-23 seq4869 111 1e-19 >seq4867 Length=22528368 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || ||| | ||| | || || || || || |||||||| ||| | Sbjct 1269227 CCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1269168 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| || |||||||| ||| |||| |||||||| ||||| |||||| Sbjct 1269167 AGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1269108 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| || | | |||| |||||| | | ||| || Sbjct 1269107 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACC 1269048 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| ||||| || ||||| || |||||||| Sbjct 1269047 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| | |||||||| Sbjct 1268969 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAACTGTTTACCG 1268910 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 1268909 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 1268850 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | || | || ||||| ||||| || Sbjct 1268849 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGCGTC 1268790 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1268789 TTCACAAAGATCTGCAT 1268773 >seq4869 Length=19992947 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| || || || |||||| || ||||| ||| Sbjct 16670749 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 16670690 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||||||||| |||||| || Sbjct 16670689 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTG 16670630 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||||| || | ||| | || ||||| |||| || Sbjct 16670629 ACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAGGTC 16670570 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 16670569 TTGACGAAGATCTGCATGCCT 16670549 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| ||| || || || |||||| || ||||| ||| Sbjct 16670521 GTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 16670462 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 16670461 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 16670402 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | ||||| || | ||| | || || || || || || Sbjct 16670401 ACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGTTAGGGTC 16670342 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 16670341 TTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420109371543456