Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4867 114 1e-20 seq4869 93.3 4e-14 seq4878 91.5 1e-13 >seq4867 Length=22528368 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| ||| | ||| | | | |||||||| || |||||||||||| Sbjct 1269228 GCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1269169 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || |||||||||| |||| |||||||| ||||| ||||| Sbjct 1269168 CAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 1269109 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||||| Sbjct 1269108 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCAC 1269049 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| || ||||| || |||||||| Sbjct 1269048 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || | |||||||||| Sbjct 1268966 GACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAACTGTTTACCGGCG 1268907 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 1268906 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACA 1268847 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 1268846 TTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTC 1268787 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1268786 ACAAAGATCTGCAT 1268773 >seq4869 Length=19992947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | ||| | | | ||||| || || |||||||||||| | Sbjct 16670779 CCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 16670720 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| || | ||| ||||| || || Sbjct 16670719 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16670660 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| || | | || | ||||||| | | ||| ||| Sbjct 16670659 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACC 16670600 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | || || || |||| || || || || ||||||||| || Sbjct 16670599 TCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATGCCT 16670549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || ||||||||||||||| || || || Sbjct 16670540 ACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCC 16670481 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || || ||||| || | | |||| | | ||| ||||| || || || |||||||| Sbjct 16670480 ATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 16670421 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||| ||||| | || | Sbjct 16670420 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGAT 16670361 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||||||| || || || ||||| |||||||| Sbjct 16670360 GGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 >seq4878 Length=25969111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 || || ||||| |||||| | |||||||| | ||||||||||||||||| ||||||||| Sbjct 11652336 AACCCTTTTGACTTTATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTCGAGAAG 11652395 Query 52824 CGAGTCGGCGAGTATAAGCG 52843 ||||| |||||||| |||| Sbjct 11652396 CGAGTTGGCGAGTACCAGCG 11652415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232078367360