Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4867 87.8 1e-12 seq4869 84.2 2e-11 >seq4867 Length=22528368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||| || || Sbjct 1268976 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAACTG 1268917 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 1268916 TTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1268857 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || ||||| || || || | || ||||| || || || Sbjct 1268856 AGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGT 1268797 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || ||||| || ||||| ||| Sbjct 1268796 CAGCGTCTTCACAAAGATCTGCATCTTT 1268769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || || || || |||||||| ||| || | | | ||||| Sbjct 1269210 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTC 1269151 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| | |||| |||||| ||||| ||||| ||||||||||| Sbjct 1269150 CAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 1269091 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || | || || || || || ||| || || | || ||||| || Sbjct 1269090 GATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTT 1269031 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| || || |||||| Sbjct 1269030 GCCAGTCAGGGTCTTTACGAAGATCTGCATA 1269000 >seq4869 Length=19992947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || ||||| || |||||||| ||| || | | | ||||| | || Sbjct 16670528 ATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTG 16670469 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | ||||| | ||| ||||| ||||| ||||| ||||| || || Sbjct 16670468 TTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTT 16670409 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||| ||||| || Sbjct 16670408 GGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGT 16670349 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || || || ||||| || ||||| | | ||| ||||| Sbjct 16670348 TAGGGTCTTGACAAAGATCTGCATCTGT-AAACAAATT 16670312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357370709265080