Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq4888 102 1e-16 seq4883 95.1 2e-14 seq4872 91.5 2e-13 >seq4888 Length=31417778 Score = 102 bits (112), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||||||||| | | || ||||||| |||||| || ||||| ||| ||||| |||| Sbjct 726478 TAATGATTAGCCTGGCAGTCTGAAACAGCTGCTCATCCCCCCAGGTCGGATGTTCTTGTT 726419 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 726418 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 726359 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | |||||||| || || |||| || Sbjct 726358 CCGGCAGCAGTCCAAACACCTC-TTGCCCAATG 726327 >seq4883 Length=37168685 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||| ||| || || | ||| ||||||| | ||||||| |||| || || || || || | Sbjct 35762993 TAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGCTCCTGCT 35763052 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | | ||| || || | ||||||||||| |||||| |||||||| |||||||| | | Sbjct 35763053 TTAATATATCACACACTCGGTTGTGTTCTCGCAGCCAGATGGTGGCATACATCATGAGTC 35763112 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 | || || | ||||| | || | ||||| ||||| || Sbjct 35763113 CAGGAACCAGTCCAAAGGCCTCGTGACCCACAGCAAAACG 35763152 >seq4872 Length=27116566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | ||||| |||| || || || || || || | Sbjct 3679155 GATGAGACGAGTGGTTTGGAAGATTCTTTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 3679214 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| | || | ||||||||| | ||||| ||||| || |||||||| ||||| || Sbjct 3679215 GATATCAC-TACACGGTTGTGTTCACGGAGCCAAATGGTTGCATACATCATCAAACCTGG 3679273 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || | |||| ||||| ||||| | || || || || | || | Sbjct 3679274 AACCAGACCGAAGGCCTCATGACCCACAGCAAATTTATGTTCCTCCGGGACATGAGGAGG 3679333 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| ||||| || || || |||| ||||| || | ||| Sbjct 3679334 ATAGTGCATCTCCACCTGGACATCTTTCACCAGCGGAGGGTACACCTCACCATCCACAAC 3679393 Query 9966 CT 9967 || Sbjct 3679394 CT 3679395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723683780219200