Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4869 123 4e-23 >seq4869 Length=19992947 Score = 123 bits (136), Expect = 4e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||||| |||||| || || |||| Sbjct 3226158 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGT 3226217 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 ||||||| || |||||||| ||||| ||| ||||| || |||||||| ||||| || | Sbjct 3226218 GAATGTTGAGGGACTGGCTCTGGTCAATG-AAGGCTCCTCGATCTGCAGCCATCTTTAAG 3226276 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||||| || || ||||||||||||||||| Sbjct 3226277 ATAGTCTTTTGAGAGATCTCCCACACCGTCTT 3226308 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| ||||| || | || ||| | | |||| ||||| | || |||| | Sbjct 3226604 CTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATTGA 3226663 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | |||||||| ||| || ||||||||||||||||| ||||| Sbjct 3226664 CTCGTTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATGGGAGCCAGCAGCAGACT 3226723 Query 204316 GTTGCGCACACC 204327 ||| |||||||| Sbjct 3226724 GTTACGCACACC 3226735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795106616017280