Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4867 149 7e-31 seq4869 140 4e-28 >seq4867 Length=22528368 Score = 149 bits (164), Expect = 7e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 46357 ATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATT 46416 |||||| ||||| || | | ||||| || ||||| | || |||||| ||||| || Sbjct 1269237 ATATTAATTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTT 1269178 Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 ||||||||| || ||||| | || || ||||| || |||||||| |||| |||||||| Sbjct 1269177 GTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTG 1269118 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCT 46536 ||| | || | || ||||||||| |||||| ||||| || | | ||||| || Sbjct 1269117 GTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACT 1269058 Query 46537 CGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||||| || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 1269057 TGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||||||| | || |||||| ||||| ||||||||||| Sbjct 1268999 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1268940 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | ||| || |||||||| |||| ||||||||||| | || Sbjct 1268939 AGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1268880 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | |||||||| | || || Sbjct 1268879 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1268820 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| ||||| |||||||| || |||||||| ||||| || Sbjct 1268819 TCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 1268770 >seq4869 Length=19992947 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||||| |||||||||||| || ||| || ||||| ||||||||||| Sbjct 16670779 CCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 16670720 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| ||||| || || |||| | ||||||||| | || Sbjct 16670719 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16670660 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| |||||| ||||| || | | |||||||| | || || Sbjct 16670659 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACC 16670600 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || || || ||||| ||||| Sbjct 16670599 TCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| |||||||||||| || ||| || || || |||||||||| Sbjct 16670553 TGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGG 16670494 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| ||||| || || ||||| | ||||||||| | | Sbjct 16670493 ACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGG 16670434 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | || | Sbjct 16670433 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGA 16670374 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || || || || || |||||||| ||||| Sbjct 16670373 CCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565203863933760