Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4887 149 2e-30 seq4867 96.9 1e-14 seq4886 87.8 7e-12 >seq4887 Length=33568646 Score = 149 bits (164), Expect = 2e-30 Identities = 457/701 (65%), Gaps = 13/701 (2%) Strand=Plus/Minus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||||| ||||||||||| || || ||||||| || ||||| || || | || |||| Sbjct 5554101 AGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGG 5554042 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTT 451028 || || || || || ||||||||||| || | || |||| ||||| || | || ||| Sbjct 5554041 GAAAGTGGAGATCATCGCAAATGACCAGGGGAACA-GAACAACTCC--CA--GTTATGTT 5553987 Query 451029 ----TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAAT 451084 | || || |||| || || | || | || |||||| ||| || Sbjct 5553986 GCCTTCACTGACACAGAGAGGCTCATCGGAGATGCAGCTAAAAACCAGGTGGCCATGAAC 5553927 Query 451085 GCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACT 451144 |||| ||||| || | |||||| || | | |||||| | | || |||||| Sbjct 5553926 CCCAACAACACTGTGTTTGATGCCAAGAGGCTGATTGGCAGGAGGTTTGATGACCCAGTA 5553867 Query 451145 GTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTAT 451204 || || || | || || || | | || || | | | | ||||| || | Sbjct 5553866 GTGCAGTCTGACATGAAGCACTGGTCCTTCCAAGTCGTCAGTGATAGCGGAAAACCAAAG 5553807 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||||||| | || ||||| |||| || || ||| ||||||||||||||| |||||| Sbjct 5553806 GTTCAAGTCGAATACAAAGGAGAAAACAAGACATTTTATCCTGAAGAAATTTCCTCTATG 5553747 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || ||||| || | || ||| ||| | || || || ||||| Sbjct 5553746 GTCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGTGACAAATGCA 5553687 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || | || ||||| || ||||||||||| | ||| ||||||| ||||||||||| ||| Sbjct 5553686 GTTGTCACAGTTCCTGCCTATTTCAATGACTCCCAAAGGCAAGCCACTAAAGATGCTGGA 5553627 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||||| | ||||| || |||| || || || || || || || || | || Sbjct 5553626 GTGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCC 5553567 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || || || | ||| |||| || |||| || | | | ||||| | ||| Sbjct 5553566 TACGGCCTTGACAAAGGCAAAG---GAGGAGAACGCAACGTCCTGATCTTTGACCTGGGT 5553510 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || ||| || | || | ||||||||||| | ||||| || ||||| Sbjct 5553509 GGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCC 5553450 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || |||||||| || || || || |||| || Sbjct 5553449 ACAGCCGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 5553409 Score = 145 bits (160), Expect = 3e-29 Identities = 456/701 (65%), Gaps = 13/701 (2%) Strand=Plus/Plus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||||| ||||||||||| || || ||||||| || ||||| || || | || |||| Sbjct 24632038 AGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGG 24632097 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTT 451028 || || || || || || || ||||| || | || |||| ||||| || | || ||| Sbjct 24632098 GAAAGTGGAGATCATCGCCAACGACCAGGGGAACA-GAACAACTCC--CA--GCTATGTT 24632152 Query 451029 ----TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAAT 451084 | || || |||| || || | || | || |||||| ||| || Sbjct 24632153 GCCTTCACTGACACAGAGAGGCTCATTGGAGATGCAGCTAAAAACCAGGTGGCCATGAAC 24632212 Query 451085 GCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACT 451144 |||| ||||| || | |||||| || | | |||||| | | || |||||| Sbjct 24632213 CCCAACAACACCGTGTTTGATGCCAAGAGGCTGATTGGCAGAAAGTTTGATGACCCAGTA 24632272 Query 451145 GTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTAT 451204 || || || | || || || | | || || | | | | |||||||| | Sbjct 24632273 GTGCAGTCTGACATGAAGCACTGGTCCTTCCAAGTCGTCAGTGACAGCGGAAAGCCAAAG 24632332 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||||||| | || ||||| |||| || || || ||||||||||||||| |||||| Sbjct 24632333 GTTCAAGTCGAATACAAAGGAGAAAACAAGACATTCAATCCTGAAGAAATTTCCTCTATG 24632392 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || ||||| || | || ||| ||| | || || || ||||| Sbjct 24632393 GTCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGTGACAAATGCA 24632452 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || ||||| |||||||||||||| |||| ||||||| |||||||| || ||| Sbjct 24632453 GTTATCACAGTTCCTGCTTATTTCAATGACTCACAGAGGCAAGCCACTAAAGACGCTGGA 24632512 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||||| | ||||| || |||| || || || || || || || || | || Sbjct 24632513 GTGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCC 24632572 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || || || | ||| |||| || |||| || | | | ||||| | ||| Sbjct 24632573 TACGGCCTTGACAAAGGCAAAG---GAGCAGAACGCAACGTCCTGATCTTTGACCTGGGT 24632629 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || ||| || | || | ||||||||||| | ||||| || ||||| Sbjct 24632630 GGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCC 24632689 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || |||||||| || || || || |||| || Sbjct 24632690 ACAGCCGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 24632730 Score = 140 bits (154), Expect = 1e-27 Identities = 461/711 (65%), Gaps = 7/711 (1%) Strand=Plus/Minus Query 450896 ATGTCTGTCAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGT 450955 ||||| | ||| |||||| ||||||||||| || || ||||||| || ||||| || Sbjct 24628932 ATGTCAGCAAAAGGAGTAGCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGG 24628873 Query 450956 GTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCC 451014 || | || ||||||| || || || || || || ||||| || | || |||| ||||| Sbjct 24628872 GTGTTTCAGCATGGAAAAGTGGAGATCATCGCCAACGACCAGGGGAACA-GAACAACTCC 24628814 Query 451015 TTCATGGGTAAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGT 451074 | | || || || || |||| || || | || | || |||||| ||| Sbjct 24628813 AGC-TATGTTGCCTTCACTGACACAGAGAGGCTCATTGGAGATGCAGCTAAAAACCAGGT 24628755 Query 451075 AAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGA 451134 || |||| ||||| || | |||||| || | | |||||| | | || ||| Sbjct 24628754 GGCCATGAACCCCAACAACACTGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGA 24628695 Query 451135 TGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGG 451194 ||| || || || | || || |||| | || || | | | | || Sbjct 24628694 TGACCCAGTAGTGCAGTCTGACATGAAGCACTGGTCTTTCCAAGTCGTCAGTGACAGCGG 24628635 Query 451195 AAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAAT 451254 |||||| | ||||||| | || ||||| |||| || || || |||||||||||| Sbjct 24628634 AAAGCCAAAGGTTCAAGTCGAATACAAAGGAGAAAACAAGACATTCAATCCTGAAGAAAT 24628575 Query 451255 TTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGT 451314 ||| |||||||| || || ||||| || | || ||| ||| | || || Sbjct 24628574 TTCCTCTATGGTCCTGGTGAAGATGAAGGAGATTGCTGAAGCTTATCTGGGGCAGAAGGT 24628515 Query 451315 TACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAA 451374 || |||| || || || ||||| || ||||||||||| | || ||||||| ||||| Sbjct 24628514 GACAAATGC-GTTATCACAGTTCCTGCATATTTCAATGACTCCCAGAGGCAAGCCACTAA 24628456 Query 451375 AGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGC 451434 ||| || ||| || ||||| | ||||| || |||| || || || || || || || Sbjct 24628455 AGACGCTGGAGTGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGC 24628396 Query 451435 TGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATT 451494 || | || || || || | ||| |||| || |||| || | | | || Sbjct 24628395 AGCCATCGCCTACGGCCTTGACAAAGGCAAAG---GAGCAGAACGCAACGTCCTGATCTT 24628339 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 ||| | |||||||| || ||| || | || | ||||||||||| | ||||| Sbjct 24628338 TGACCTGGGTGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGA 24628279 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || || || |||||||| || || || || |||| || Sbjct 24628278 GGTGAAGGCCACAGCAGGAGACACTCATCTGGGTGGCGAGGACTTTGACAA 24628228 >seq4867 Length=22528368 Score = 96.9 bits (106), Expect = 1e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || |||||||| || ||| || | Sbjct 1269001 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGT 1269060 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || |||||||| ||||||||||| || Sbjct 1269061 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1269120 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| || ||||||||| | || || | || || || Sbjct 1269121 CAGCGTCTGATCTTCGCCGGTAAACAGCTGGAAGATGGACGCACGCTGTCCGACTACAAC 1269180 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 1269181 ATCCAGAAGGA 1269191 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || || |||||||| ||||| | Sbjct 1268773 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGC 1268832 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || || |||||||| ||||||||||| || Sbjct 1268833 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1268892 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| | ||||||||| | || || | || || || Sbjct 1268893 CAGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACACTGTCCGACTACAAC 1268952 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 1268953 ATCCAGAAGGA 1268963 >seq4886 Length=30003503 Score = 87.8 bits (96), Expect = 7e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||||| || ||||||| || ||||||||||| | |||| ||||||| || | Sbjct 23240756 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 23240697 Query 450978 AAATTATAGCAAATGACCAAGGA 451000 |||| || || |||||||||||| Sbjct 23240696 AAATCATTGCTAATGACCAAGGA 23240674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975594665695904