Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4867 167 5e-36 seq4869 145 2e-29 >seq4867 Length=22528368 Score = 167 bits (184), Expect = 5e-36 Identities = 171/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || |||||| || || |||||||| || || || ||||| |||| || || | Sbjct 1269219 GAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCG 1269160 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||| ||||| |||||||| || || || ||||| |||||||||||||| Sbjct 1269159 TCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTC 1269100 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 ||||| || || || ||||||||||||||||||||| ||| |||||| ||||| Sbjct 1269099 CTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTTGGTTCCACCTCAAG 1269043 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| || |||||||| | ||||| Sbjct 1269042 AGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || || || || |||||||| || || || ||||| |||| || || Sbjct 1268994 TCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 1268935 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| ||||| |||||||| || || || ||||| ||||||||||| Sbjct 1268934 GCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 1268875 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||| |||||||||||||| || || ||||| Sbjct 1268874 TTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAG 1268815 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| || || || || | ||||| Sbjct 1268814 AGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 >seq4869 Length=19992947 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || || || | ||||||||||| || || ||||| |||| || || Sbjct 16670774 TCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGT 16670715 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| || | || ||||| || |||||||| Sbjct 16670714 GCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 16670655 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||||||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 16670654 TTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---GCTTGGCTCGACCTC 16670598 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| |||||||| || || ||||| | ||||| Sbjct 16670597 GAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || | ||||||||||| ||||| ||||| |||| || || Sbjct 16670545 CTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTG 16670486 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||| || || || ||||| | | || ||||| || ||||||||| Sbjct 16670485 CGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCT 16670426 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 |||||||| || || || ||| || |||||||||||||| |||| || || ||| Sbjct 16670425 TCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCGACCTCA 16670369 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 16670368 AGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109412115941096