Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4867 105 4e-18 seq4869 96.9 2e-15 >seq4867 Length=22528368 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||| |||||| ||||| || Sbjct 1268963 TCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAG 1268904 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| ||||| || Sbjct 1268903 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT 1268846 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || |||||| || | || ||||| || || || || ||||||| Sbjct 1268845 TCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCA 1268786 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 1268785 CAAAGATCTGCATCTT 1268770 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| ||||||||||| ||||| || Sbjct 1269191 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAG 1269132 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| |||||| Sbjct 1269131 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1269072 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | || || || | || ||||| || || || || ||||| || Sbjct 1269071 TCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACG 1269012 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1269011 AAGATCTGCATA 1269000 >seq4869 Length=19992947 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || |||| || | ||| |||||||||||||| ||||| || Sbjct 16670551 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 16670492 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 16670491 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 16670432 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||||| || || || || || | |||| | ||| | Sbjct 16670431 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTTGGCTCGA 16670374 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 16670373 CCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | ||| |||| ||||||||||| || ||||| Sbjct 16670743 TCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAG 16670684 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||||| || Sbjct 16670683 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTGAC--AT 16670626 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | | ||| || |||| ||| ||||| || || || | ||||| | Sbjct 16670625 TCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGA 16670566 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 16670565 CGAAGATCTGCAT 16670553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324614260764864