Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4878 129 7e-25 seq255 111 2e-19 seq4869 82.4 9e-11 >seq4878 Length=25969111 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| |||||||| || | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| ||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 >seq255 Length=1984256 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | || |||||||| |||||||| | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | ||||||||||||||| ||||| || ||||| || || ||||||| Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || ||||| Sbjct 640911 CTACTAATCGCTCTCC 640926 >seq4869 Length=19992947 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47905 CTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAG 47964 ||||||||| || | || || | || ||| || | || || |||| ||||||| | Sbjct 3228312 CTACCTCATCGTGACTGGTGTACTCTACTATCTCTGTGCACAGGTTACTGGATTTGATGG 3228371 Query 47965 TACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTG 48024 | |||| || || || || | ||| || ||||||||||||||||| | |||| Sbjct 3228372 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTG 3228431 Query 48025 TTCCAGTTTCTATCTGAGATTCAATGAT 48052 | ||||| ||| ||||||| |||||||| Sbjct 3228432 TGCCAGTCTCTGTCTGAGACTCAATGAT 3228459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562074455152320