Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4887 230 4e-55 seq193 197 3e-45 seq1536 152 1e-31 seq4884 109 1e-18 seq4878 104 4e-17 seq4869 100 5e-16 seq57 93.3 8e-14 >seq4887 Length=33568646 Score = 230 bits (254), Expect = 4e-55 Identities = 198/245 (81%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| | |||||| | |||||||| ||||| ||||| |||||||| |||| Sbjct 31541381 GCTGACAGCCGCTGTTCATGTGTCTCAGGACCTTTTGTTTAAGTTGCGCCACCTGTTCCC 31541440 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||||||||| || || ||||||| || ||||| |||||||| | ||||| ||||| | Sbjct 31541441 GCAGAACGGAGGCTGTGTTGGACAAGCCAGCGTTATCAGACTTCAAAACCTTGACTTTGT 31541500 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| |||| |||||| ||||||||||||| |||||||| ||||| || | |||| Sbjct 31541501 CCTCCAGTCGCGAGATGCGCTCCAGTTTGCGCCTTCGGCATTTAGTGGCCGCAAGTCGGT 31541560 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 | || || | || || ||||| || ||||||||||||| |||||||||||| |||||| Sbjct 31541561 TACGAAGCCGTTTGCGCTCCGCTTTAATGCGTTCCTGGTTCTCCATGTCGATTGGAGACA 31541620 Query 241629 TGGGT 241633 | ||| Sbjct 31541621 TTGGT 31541625 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 8/113 (7%) Strand=Plus/Plus Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987 ||||| ||||| |||||| | |||||||||||||| || || ||||||| || |||||| Sbjct 31541416 TGTTTAAGTTGCGCCACCTGTTCCCGCAGAACGGAGGCTGTGTTGGACAAGCCAGCGTTA 31541475 Query 238988 TCAGACTTGA--------GCATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 |||||||| | | || |||||||| |||| |||||| ||||| || Sbjct 31541476 TCAGACTTCAAAACCTTGACTTTGTCCTCCAGTCGCGAGATGCGCTCCAGTTT 31541528 >seq193 Length=1532359 Score = 197 bits (218), Expect = 3e-45 Identities = 176/219 (80%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| ||||| |||||||| || |||| || | ||||||||| ||||||| Sbjct 1337848 CATGACCTTCTGCTTGAGCTGGGCCACTTGCTCCCTCAACAGGGACGCGGTGCTGGACAG 1337789 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||||| |||| ||| || | |||||||| |||||||||| | |||||| ||||| Sbjct 1337788 TCCGGCGTTATCAGTCTTTAGGATTTTCACTTTGTCCTCCAGCCTGGAGATGCGCTCCAG 1337729 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || || || || || |||||||| || | ||||||| || ||||| || ||||| || Sbjct 1337728 CTTCCGTCGCCG-CACTTGGTGGCCGCAAGCCGGTTCCTAAGCCTCTTGCGCTCCGCTTT 1337670 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGG 241632 |||||| ||||||||||||||||||||||| ||| |||| Sbjct 1337669 GATGCGCTCCTGGTCCTCCATGTCGATCGGGGACATGGG 1337631 >seq1536 Length=103162 Score = 152 bits (168), Expect = 1e-31 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| || || | || || ||| || ||||| ||| ||||| |||| |||||| |||| Sbjct 5869 CTGGCACCCGTTGCTCACGTGGTTCATGACCTTCTGCTTGAGCTGGGACACCTGTTCCCT 5810 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 ||| | | ||||| || ||| | | ||| | | ||| || |||||||| ||||| Sbjct 5809 CAGGATGCTGGCGGTGGAGGCCAGGTCCGAGTTCTGGGTCTTCAGAACCTTCACCTTCTC 5750 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| |||| ||| || ||||| |||||| |||||| |||| ||| || | ||||| Sbjct 5749 CTCCAGACGCGAGATCCGCTCCAGCTTGCGCTTGCGGCACTTGGAGGCGGCGATACGGTT 5690 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| |||| || |||||||||||||| ||||| |||| |||||| ||||| Sbjct 5689 GCGGAGCTTCTTGCGCTCCGCCTTGATGCGCTCCTGCGTGTCCAGGTCGATGGGAGA 5633 >seq4884 Length=26945264 Score = 109 bits (120), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 195731 ACGCACTTTTTGTGGGGCTTGCAGGCA---TCCAGGGAAGGGTCGCTGGAAAACGTGCCC 195787 || |||| ||| || ||||||||||| ||||| || || | |||||| || ||||| Sbjct 6969202 ACTCACTCTTTATGAGGCTTGCAGGCTGCTTCCAGAGAGGGTTTGCTGGAGAATGTGCCA 6969261 Query 195788 TTACCACATGGAACACATGGTTTATGGCAATGTGTCTCATAGTTGTTCCCCTTTGTGCAG 195847 | ||| |||||||||||||||||||| | ||| |||| ||||| || || ||| Sbjct 6969262 GTCTTACAGGGAACACATGGTTTATGGCAGTATGTGACATAATTGTTGCCATTCTCACAG 6969321 Query 195848 TAGTAACCAGGTTTACACGCGCACACTCTGTTGCTGTTTTGAGTGCACGGAGTCACTTCT 195907 || |||| ||||| || |||| | ||||| | |||||||| ||||| ||||| Sbjct 6969322 TAAAAACCTGGTTTGCAGAAGCACTTCCGATTGCTTTCCTGAGTGCATGGAGTAACTTCC 6969381 Query 195908 ATCTCATTTTT 195918 || | ||||| Sbjct 6969382 ATTTGCTTTTT 6969392 >seq4878 Length=25969111 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||||||||| | ||||||||| ||| |||||||||| || |||| || Sbjct 11651628 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 11651569 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||||||||| | || ||||| ||||| |||||||| || |||||||| || || || Sbjct 11651568 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCC 11651509 Query 48275 GTGAGCCTCTCTCCGAAAGA 48294 | |||||||| ||||| Sbjct 11651508 ACCACTCTCTCTCCTAAAGA 11651489 >seq4869 Length=19992947 Score = 100 bits (110), Expect = 5e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||||| ||||||||||| ||| || |||||||||||||||||| ||| Sbjct 3228329 GTGTACTCTACTATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGG 3228388 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| | |||||||| ||||||||||| | || |||||| ||| Sbjct 3228389 -TTGCTCTTGCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTCTGTCTG 3228447 Query 213647 GGAC 213650 ||| Sbjct 3228448 AGAC 3228451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 |||||||||||||| ||||||||| ||||| ||||| || ||| || ||||||||| Sbjct 3226647 GTGTAGGGCTCGATTGACTCGTTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATG 3226706 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||||| ||| |||||||| | ||| || ||| Sbjct 3226707 GGAGCCAGCAGCAGACTGTTACGCACACCATGC 3226739 >seq57 Length=83953 Score = 93.3 bits (102), Expect = 8e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC-- 241471 || ||| | ||| |||||||||||||| || || ||||| | | ||||| |||| Sbjct 32809 CATGACTTTCTGCTTGAGTTGGGCCACTTGATCGCGCAGCATGTTGGCGGT---GGACGC 32753 Query 241472 -AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 || | | ||| | ||||| || ||| ||||| ||||||||||| | ||| | || Sbjct 32752 GAGCTCCGAGTTCTGCGACTTCAGGTTCTTGACTTTGTCCTCCAGCCGGGAGATCCTCTC 32693 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 |||||| | | |||||||||| || || | ||||||| | | ||| | || || Sbjct 32692 CAGTTTCCTCTTCCGGCATTTGGATGCGGCGATTCGGTTCCTCATGCGCTTCCTCTCGGC 32633 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || || |||||| ||||||||| || || || Sbjct 32632 TTTAATCCGCTCCTGGCTCTCCATGTCAATGGGGGA 32597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931475883345920