Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4869 95.1 2e-14 seq255 93.3 8e-14 seq4878 84.2 4e-11 >seq4869 Length=19992947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 221121 CCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGA 221180 |||| || || ||||| || || || || | ||| | ||| ||| | || |||| Sbjct 3226600 CCACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGA 3226659 Query 221181 TGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCA 221240 | |||||||||||||||||||||||| ||| || ||||||||||| |||| ||||| Sbjct 3226660 TTGACTCGTTGTTGCCCAGGATCTGAGCTGTGGAAGCAGTGGGCATGGGAGCCAGCAGCA 3226719 Query 221241 GACTGTTGCGCA 221252 ||||||| |||| Sbjct 3226720 GACTGTTACGCA 3226731 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || | |||| |||| || |||||||| || ||||| ||| | |||||||| Sbjct 3228314 ACCTCATCGTGACTGGTGTACTCTACTATCTCTGTGCACAGGTTACTGGATTTGATGGTG 3228373 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || |||||| ||| ||||||||||| ||||| |||| | Sbjct 3228374 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTG 3228433 Query 221852 CCAGTCTCCAGCTGAG 221867 |||||||| ||||| Sbjct 3228434 CCAGTCTCTGTCTGAG 3228449 >seq255 Length=1984256 Score = 93.3 bits (102), Expect = 8e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| |||||||| ||||| |||||||| ||| || || ||| Sbjct 640929 TTAGGAGAGCGATTAGTAGCTTTTGCTGCGGTGGAAGGCATCTTCTTCTCTGGATCATTT 640870 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 640869 GCTGCCATCTACTGGTTGAAGAA-AAGAGGTCTGATGCCCGGACTCACCTACTCCAATGA 640811 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 640810 ACTCATCAGCAGAGATGAGG 640791 >seq4878 Length=25969111 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||| | |||| || |||||||| ||||| || ||||| || || || ||| Sbjct 11651492 TTAGGAGAGAGAGTGGTGGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTT 11651551 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGA 25988 || | || |||||||| ||| ||| | |||| |||||| || || ||| ||||| || Sbjct 11651552 GCTTCTATTTTCTGGCTAAAGAAGA-GAGGACTCATGCCTGGACTCACCTTCTCCAATGA 11651610 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 11651611 ACTCATCAGCAGAGATGAGG 11651630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928788047582720