Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4886 196 3e-44 seq4887 154 1e-31 seq4868 104 2e-16 seq4871 100 2e-15 >seq4886 Length=30003503 Score = 196 bits (216), Expect = 3e-44 Identities = 376/547 (69%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | ||||| |||||| ||||| | || | || |||| || || Sbjct 7243398 ATTGGCATTGATCTGGGAACCACTTACTCCTGTGTGGGAGTGTTCCAGCATGGCAAGGTG 7243339 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||||| ||||| ||||| || ||||| || ||| |||||| | || || || Sbjct 7243338 GAAATCATTGCTAATGATCAAGGAAACAGAACCACTCCAAGCTATGTTGCCTTCACAGAC 7243279 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || ||| || |||||||||||||| || | || | || || || || || Sbjct 7243278 ACAGAAAGACTCATTGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCCAACAACACA 7243219 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGA 474570 | |||||||| ||| | |||||||| | || ||| ||||| ||| | ||||| || || Sbjct 7243218 GTATTTGATGCCAAACGGCTGATTGGTAGAAAGTTTAATGAT-CCAGTGGTCCAGTCAGA 7243160 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CA 474628 ||| | |||||| || ||||| || | | | || |||||| | | ||| | Sbjct 7243159 CATGAAGCTTTGGCCCTTCAAGGTCATCAGCGAAGACGGCAAACCAAAAGTTCAAGTTGA 7243100 Query 474629 ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 |||| ||| || || || ||| | || || |||| || || ||||| ||| | Sbjct 7243099 GTACA--AAGGAGAGACCAAGACATTCTACCCTGAGGAAATCTCATCCATGGTCCTAGTC 7243042 Query 474689 AAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 ||||||| | | | || |||| | | || || || ||| | | |||| || || || Sbjct 7243041 AAAATGAGAGAGATCGCCGAG-GCCTTCCTGGGTCAGAGAGTCAATAATGCTGTCATCAC 7242983 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| || ||||||||||| || | |||||||| ||||||||||| || || Sbjct 7242982 GGTCCCAGCGTACTTTAATGATTCGCAGAGGCAAGCAACCAAAGATGCGGGGGTGATCGC 7242923 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||| | || || | || ||||| ||||| || ||||| || || |||| ||||| || Sbjct 7242922 CGGTTTGAACGTGCTGCGAATTATCAATGAGCCTACAGCGGCAGCCATTGCCTATGGGCT 7242863 Query 474868 TGATAAG 474874 || ||| Sbjct 7242862 GGACAAG 7242856 Score = 96.9 bits (106), Expect = 2e-14 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || ||| ||||||| ||| | ||| |||| ||||| | Sbjct 23240756 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 23240697 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||| ||||||||||| || || || || ||| ||||| | || || || Sbjct 23240696 AAATCATTGCTAATGACCAAGGAAACAGGACCACTCCAAGCTATGTAGCATTCACAGATT 23240637 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 | | | || | |||||||||||||| ||| | || | ||| Sbjct 23240636 CAGGAGAT-TGATTGGAGATGCTGCGAAAAACCAGGTTGC 23240598 >seq4887 Length=33568646 Score = 154 bits (170), Expect = 1e-31 Identities = 368/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| ||||| | || || || ||| ||||| | || | || |||| ||| Sbjct 5554097 GCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGGAAA 5554038 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || || |||||||| || || |||||||| || |||||| | || ||| Sbjct 5554037 GTGGAGATCATCGCAAATGACCAGGGGAACAGAACAACTCCCAGTTATGTTGCCTTCACT 5553978 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || || |||||||| |||||| | || | || || || || Sbjct 5553977 GACACAGAGAGGCTCATCGGAGATGCAGCTAAAAACCAGGTGGCCATGAACCCCAACAAC 5553918 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATC 474567 ||| | |||||||| || || ||||||| | | |||||||| ||| | || || || Sbjct 5553917 ACTGTGTTTGATGCCAAGAGGCTGATTGGCAGGAGGTTTGATGAC-CCAGTAGTGCAGTC 5553859 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| ||| || ||| | || | || | | || | | || |||||| | | ||| Sbjct 5553858 TGACATGAAGCACTGGTCCTTCCAAGTCGTCAGTGATAGCGGAAAACCAAAGGTTCAAGT 5553799 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||||| ||| |||| || ||||| || ||| ||||||| || ||||| | Sbjct 5553798 CGAATACAA--AGGAGAAAACAAGACATTTTATCCTGAAGAAATTTCCTCTATGGTCCTG 5553741 Query 474686 GCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | || ||||| | | || |||| ||||| || || | || || ||||||| Sbjct 5553740 GTGAAGATGAAGGAGATTGCTGAAGCT--TATCTGGGGCAGAAGGTGACAAATGCAGTTG 5553683 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || ||||| || ||||| ||||| || ||| | ||||| ||||||||||| ||| | Sbjct 5553682 TCACAGTTCCTGCCTATTTCAATGACTCCCAAAGGCAAGCCACTAAAGATGCTGGAGTGA 5553623 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || || || ||||| | | || || || || || || || || || | || || | Sbjct 5553622 TCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCCTACG 5553563 Query 474864 GTCTTGATAA 474873 | ||||| || Sbjct 5553562 GCCTTGACAA 5553553 Score = 149 bits (164), Expect = 4e-30 Identities = 372/553 (67%), Gaps = 18/553 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| ||||| | || || || ||| ||||| | || | || |||| ||| Sbjct 24628914 GCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGAAAA 24628855 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||| ||||| || || |||||||| ||| | |||||| | || ||| Sbjct 24628854 GTGGAGATCATCGCCAACGACCAGGGGAACAGAACAACTCCAGC-TATGTTGCCTTCACT 24628796 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||||||||| |||||| | || | || || || || Sbjct 24628795 GACACAGAGAGGCTCATTGGAGATGCAGCTAAAAACCAGGTGGCCATGAACCCCAACAAC 24628736 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATC 474567 ||| | |||||||| || || ||||||| | || |||||||| ||| | || || || Sbjct 24628735 ACTGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGATGA-CCCAGTAGTGCAGTC 24628677 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG- 474626 ||| ||| || ||| |||| | || | | || | || || ||| | | ||| Sbjct 24628676 TGACATGAAGCACTGGTCTTTCCAAGTCGTCAGTGACAGCGGAAAGCCAAAGGTTCAAGT 24628617 Query 474627 -CAATACACGCAGGTG-AAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTT 474682 |||||| ||| | |||| | ||| |||| || ||| ||||||| || ||||| Sbjct 24628616 CGAATACA--AAGGAGAAAACAAGACA---TTCAATCCTGAAGAAATTTCCTCTATGGTC 24628562 Query 474683 TTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | | || |||| ||||| || || | || || |||| | Sbjct 24628561 CTGGTGAAGATGAAGGAGATTGCTGAAGCT--TATCTGGGGCAGAAGGTGACAAATGC-G 24628505 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || ||||| |||||||| ||||| || || | ||||| |||||||| || ||| Sbjct 24628504 TTATCACAGTTCCTGCATATTTCAATGACTCCCAGAGGCAAGCCACTAAAGACGCTGGAG 24628445 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || || || || ||||| | | || || || || || || || || || | || | Sbjct 24628444 TGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCCT 24628385 Query 474861 ATGGTCTTGATAA 474873 | || ||||| || Sbjct 24628384 ACGGCCTTGACAA 24628372 Score = 138 bits (152), Expect = 7e-27 Identities = 368/553 (67%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| ||||| | || || || ||| ||||| | || | || |||| ||| Sbjct 24632042 GCCATTGGAATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGGAAA 24632101 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||| ||||| || || |||||||| || |||||| | || ||| Sbjct 24632102 GTGGAGATCATCGCCAACGACCAGGGGAACAGAACAACTCCCAGCTATGTTGCCTTCACT 24632161 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||||||||| |||||| | || | || || || || Sbjct 24632162 GACACAGAGAGGCTCATTGGAGATGCAGCTAAAAACCAGGTGGCCATGAACCCCAACAAC 24632221 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATC 474567 || | |||||||| || || ||||||| | || |||||||| ||| | || || || Sbjct 24632222 ACCGTGTTTGATGCCAAGAGGCTGATTGGCAGAAAGTTTGATGA-CCCAGTAGTGCAGTC 24632280 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG- 474626 ||| ||| || ||| | || | || | | || | || || ||| | | ||| Sbjct 24632281 TGACATGAAGCACTGGTCCTTCCAAGTCGTCAGTGACAGCGGAAAGCCAAAGGTTCAAGT 24632340 Query 474627 -CAATACACGCAGGTG-AAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTT 474682 |||||| ||| | |||| | ||| |||| || ||| ||||||| || ||||| Sbjct 24632341 CGAATACA--AAGGAGAAAACAAGACA---TTCAATCCTGAAGAAATTTCCTCTATGGTC 24632395 Query 474683 TTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | | || |||| ||||| || || | || || |||||| Sbjct 24632396 CTGGTGAAGATGAAGGAGATTGCTGAAGCT--TATCTGGGGCAGAAGGTGACAAATGCAG 24632453 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || ||||| || ||||| ||||| || || | ||||| |||||||| || ||| Sbjct 24632454 TTATCACAGTTCCTGCTTATTTCAATGACTCACAGAGGCAAGCCACTAAAGACGCTGGAG 24632513 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || || || || ||||| | | || || || || || || || || || | || | Sbjct 24632514 TGATCGCTGGGCTCAATGTCCTCAGAATCATCAACGAGCCCACGGCTGCAGCCATCGCCT 24632573 Query 474861 ATGGTCTTGATAA 474873 | || ||||| || Sbjct 24632574 ACGGCCTTGACAA 24632586 >seq4868 Length=23726471 Score = 104 bits (114), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| ||||| |||| || || ||| ||||| | || | || |||||||| Sbjct 6528780 GCAGTTGGCATTGACCTAGGGACCACCTACTCCTGTGTGGGGGTCTTTCAGCATGGTAAA 6528721 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || |||||| ||||| | || || Sbjct 6528720 GTTGAAATCATTGCCAATGACCAGGGCAACAGGACCACACCAAGTTATGTAGCATTCACA 6528661 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || ||||| || |||||||||||||| ||| |||||| Sbjct 6528660 GACACTGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAG 6528621 >seq4871 Length=24933493 Score = 100 bits (110), Expect = 2e-15 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || |||||||| ||||| || || || || || |||| Sbjct 7395394 ATGCTGTGGTCACAGTGCCAGCTTACTTTAATGACTCTCAGCGCCAGGCCAC-AAGGATG 7395452 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || |||||||| | |||||||| |||||||||||||| || || Sbjct 7395453 CTGGAACCATTGCCGGCCTTAATGTCCTTCGTATTATCAATGAACCAACAGCGGCTGCTA 7395512 Query 474855 TTGCTTATGG 474864 |||| ||||| Sbjct 7395513 TTGCATATGG 7395522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267969529963424