Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4869 100 6e-16 seq4867 91.5 3e-13 >seq4869 Length=19992947 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| || || | |||||| || || || || Sbjct 16670554 ATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCG 16670495 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| |||| ||||| ||||||||||| || ||||| || ||||| Sbjct 16670494 GACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGG 16670435 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || ||||| || | || | || Sbjct 16670434 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCG 16670375 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| |||||||||| || || | ||| |||||||| Sbjct 16670374 ACCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| ||||| | || | ||| || || | |||||| ||| || || || || Sbjct 16670780 ACCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 16670721 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| ||| |||| |||| ||||| ||||||||||| | ||||| || ||||| || Sbjct 16670720 CAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 16670661 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || || ||||| || | || | || || Sbjct 16670660 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGAC 16670601 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || || || || | || |||||||| Sbjct 16670600 CTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 >seq4867 Length=22528368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || || | || | ||| | || | ||| || ||| || || || Sbjct 1269002 ATACCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1268943 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| |||||||| || ||||| | | ||| || ||||| Sbjct 1268942 GACAGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGA 1268883 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || ||||| || | || | || Sbjct 1268882 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCA 1268823 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| | || || | ||| |||||||| || Sbjct 1268822 ACCTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 1268770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984418344478800