Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4875 134 2e-25 seq4871 134 2e-25 seq4866 134 2e-25 seq409 134 2e-25 seq172 134 2e-25 seq586 132 6e-25 seq4879 120 4e-21 seq4886 116 5e-20 seq206 116 5e-20 seq4888 114 2e-19 seq4872 91.5 2e-12 seq4869 86.0 8e-11 >seq4875 Length=22346808 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 13480713 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 13480654 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 13480653 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 13480594 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 13480593 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAA 13480534 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 13480533 CCTGCTTCAGGACTTTGTA 13480515 >seq4871 Length=24933493 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 7625396 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 7625337 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 7625336 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 7625277 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 7625276 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCAGTGTCGGGATGAA 7625217 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 7625216 CCTGCTTCAGGACTTTGTA 7625198 Score = 129 bits (142), Expect = 7e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254349 CCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGT 1254408 |||| || ||| ||| | ||| |||||||||||||||||||| | || ||| ||| Sbjct 7623090 CCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGGTGG 7623031 Query 1254409 TGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGT 1254468 ||||||||| |||| || ||||| || || | ||||||| |||| ||||||| Sbjct 7623030 AGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGTCGT 7622971 Query 1254469 TGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1254528 |||| || |||||||||| ||||| |||| |||||| || |||||| || |||| Sbjct 7622970 TGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAACCT 7622911 Query 1254529 GCTTGAGCACCTTGTA 1254544 |||| || || ||||| Sbjct 7622910 GCTTCAGGACTTTGTA 7622895 >seq4866 Length=17973520 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 1618792 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 1618733 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 1618732 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 1618673 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 1618672 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAA 1618613 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 1618612 CCTGCTTCAGGACTTTGTA 1618594 >seq409 Length=127645 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 104859 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 104918 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 104919 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 104978 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 104979 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAA 105038 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 105039 CCTGCTTCAGAACTTTGTA 105057 >seq172 Length=1055972 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 838707 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 838648 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 838647 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 838588 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 838587 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAA 838528 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 838527 CCTGCTTCAGGACTTTGTA 838509 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | || ||| | Sbjct 841567 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTCGATGTGATGG 841508 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| || || | ||||||| |||| |||| Sbjct 841507 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGCTTCACCGGCGATGCGCTCGAAGATGT 841448 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| |||||| || |||||| || | Sbjct 841447 CGTTGACGAAAGAGTTCATGATTCCCATCGCCTTGGAGGAGATCCCGGTGTCGGGATGAA 841388 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 841387 CCTGCTTCAGGACTTTGTA 841369 >seq586 Length=84231 Score = 132 bits (146), Expect = 6e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | | ||| | Sbjct 82657 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTAGAAGTGATGG 82598 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| ||||||| || || | ||| | ||||||| |||| |||| Sbjct 82597 TGGAGCGCTTGTTGTAGTGCGCGAGGCGAGACGACTCACCGGCGATGCGCTCGAAGATGT 82538 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| ||||||||| ||| || || | Sbjct 82537 CGTTGACGAAAGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCAGGATGAA 82478 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| || || ||||||| Sbjct 82477 CCTGCTTCAGGACTTTGTAGA 82457 >seq4879 Length=12992599 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||| ||||| | | ||| | Sbjct 9416429 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGCATCTCTCTAGAAGTGATTG 9416370 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| ||||||| || || | ||| | ||||||| |||| |||| Sbjct 9416369 TGGAGCGCTTGTTGTAGTGCGCGAGGCGAGACGACTCACCGGCGATGCGCTCGAAGATGT 9416310 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| ||||||||| ||| || || | Sbjct 9416309 CGTTGACGAAAGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCAGGATGAA 9416250 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 |||| || || || || |||| Sbjct 9416249 CCTGTTTCAGGACTTTATAGA 9416229 >seq4886 Length=30003503 Score = 116 bits (128), Expect = 5e-20 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| || |||||||||||| ||||||||||| || | ||| | Sbjct 23263306 TGGCCAGCTCTCCCGGCAGGAGCAGGCGCACGGCCGTCTGGATCTCCCGGGATGTGATAG 23263247 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||| || | ||||||| |||| |||| Sbjct 23263246 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCTTCTCCGGCGATGCGCTCGAAGATGT 23263187 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| |||||||||||||| | ||| | || ||||||||| ||| ||||| | Sbjct 23263186 CGTTAACAAACGAGTTCATTATGCCCATAGCTTTTGAGGAGATGCCGGTGTCCGGGTGGA 23263127 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | || || || || || || Sbjct 23263126 CTTGTTTCAGTACTTTATA 23263108 >seq206 Length=36454 Score = 116 bits (128), Expect = 5e-20 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| |||||||||||||||||||| | | ||| | Sbjct 6974 TGGCCAGCTCTCCGGGCAGCAGCAGACGCACGGCGGTCTGGATCTCTCTAGAAGTGATGG 7033 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | || || || || | ||| | ||||||| |||| |||| Sbjct 7034 TGGAGCGCTTGTTGTAATGGGCGAGGCGAGACGACTCACCGGCGATGCGCTCGAAGATGT 7093 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| ||||||||| ||| || || | Sbjct 7094 CGTTGACGAAGGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCGGTGTCAGGATGAA 7153 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || || || Sbjct 7154 CCTGCTTCAGGACTTTATA 7172 >seq4888 Length=31417778 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| | ||| |||||||||||||| | || ||| | Sbjct 29391611 TGGCCAGCTCTCCGGGCAGCAGCAGTCTCACAGCGGTCTGGATCTCTCTCGATGTGATGG 29391670 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || ||||| | ||| | |||| || |||| |||| Sbjct 29391671 TGGAGCGCTTGTTGTAGTGAGCGAGACGAGACGACTCACCGGCGATACGCTCGAAAATGT 29391730 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||||| |||| ||||| || ||| || || | Sbjct 29391731 CGTTGACGAATGAGTTCATGATGCCCATCGCCTTGGAAGAGATACCAGTGTCAGGATGAA 29391790 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| || || ||||||| Sbjct 29391791 CCTGCTTCAGGACTTTGTAGA 29391811 >seq4872 Length=27116566 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGC-GCGTGCCGATC 1254404 |||| ||||| ||| ||| | || | || |||||||| | ||| | || || ||| Sbjct 23741571 TGGCGAGTTCCCCGGGCAGCAGGAGCCTGACTGCGGTCTGCACCTCTCTGCTTGT-GATG 23741629 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 ||| ||||||||| ||||||| || ||| ||||| || ||||||| |||| || | Sbjct 23741630 GTGGAGCGCTTGTTATAGTGCGCTAGCCGGGACGCCTCTGTAGCGATGCGCTCGAACACG 23741689 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCC 1254511 || || |||||||||||||||| ||| | | || ||||||| || Sbjct 23741690 TCATTAACAAACGAGTTCATGATGCTCATGGCCCTGCTGGAGATACC 23741736 >seq4869 Length=19992947 Score = 86.0 bits (94), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| ||||||||||| || | | || |||||||||||||||||| | | Sbjct 3228338 ACTATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTG 3228397 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| ||||||||||| ||||||||||| | ||| ||||| |||| | | | | | Sbjct 3228398 CGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTCTGTCTGAGACTCAATG 3228457 Query 1628287 ATGGC 1628291 ||||| Sbjct 3228458 ATGGC 3228462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106738067829496