Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4867 118 1e-21 seq4869 114 1e-20 >seq4867 Length=22528368 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| || || || || || || || || || || ||| Sbjct 1268772 GATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAG 1268831 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 1268832 CGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCA 1268891 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 || ||| ||||||| ||||| |||||| |||| || | || ||| |||| || || | Sbjct 1268892 GCAGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGA-TGGACGCACACTGTCCGACTACA 1268950 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||| || ||||| || || || || ||||| Sbjct 1268951 ACATCCAGAAGGAGTCCACCCTCCATCTGGTG 1268982 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| | | Sbjct 1269001 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGT 1269060 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 1269061 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1269120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| ||||||||||| ||| | | |||| || || ||| Sbjct 1269121 CAGCGTCTGATCTTCGCCGGTAAACAGCTGGAAGATGGACGCACGCTGTCCGACTACAAC 1269180 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 1269181 ATCCAGAAGGAGTCCACCCTCCATCTTG 1269208 >seq4869 Length=19992947 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || ||||| ||||| || || || || || || || | | Sbjct 16670324 GATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAG 16670383 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||||||||| || || || || || Sbjct 16670384 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 16670443 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 || | ||||||||||| || ||||||||||| || | || ||| |||| || || | Sbjct 16670444 GCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGA-TGGACGCACACTGTCCGACTACA 16670502 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||| || || || || | || ||||| |||| | | |||||| Sbjct 16670503 ACATTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGC 16670552 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || ||||| || || | | | Sbjct 16670553 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 16670612 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||||||||| || || || || || Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670672 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| || | || ||| |||| || || || Sbjct 16670673 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA-TGGACGCACACTGTCCGACTACAA 16670731 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || | || ||||| |||| Sbjct 16670732 CATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCG 16670767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449870111256640