Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4880 113 4e-20 seq4870 100 2e-16 seq4869 91.5 1e-13 >seq4880 Length=21574968 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || ||||| ||||| ||||||| |||||||||||| ||||| ||||| ||| Sbjct 17191157 TCAGTTTCAGGATTGTCGCATTCAGGACACAGCACAAACTTGCGAATGAATCCATCTAGC 17191216 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | || || || || ||||||||| | || || || ||| || Sbjct 17191217 ATGTCTTGCAGTTTGTTTGCCTCATGAGATCCATTGACGATGTAGCGGTCATTCTTGGAA 17191276 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 |||| ||| ||||| || |||| ||| || || ||| | || || || Sbjct 17191277 TCGAACTGGGTTTGGGCTCCCAACTCACAACCAAAGAATTTGGTGGG 17191323 >seq4870 Length=28600511 Score = 100 bits (110), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || |||| ||| || |||||||| || | |||| ||||||||||||||| || ||||| Sbjct 3832470 AGGTCAG-CTCAGGATTGTCACACTCGGAGCACAGCACAAACTTGCGGATAAATCCATCC 3832412 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || || || ||||| ||||| |||||| | || || || || Sbjct 3832411 AGCATGTCCTGCAGTTTGTTGGCTTCATGGGATCCGTTTACGATGTAGCGGTCATTCTTA 3832352 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || ||||| |||| ||| || || || |||| || || Sbjct 3832351 GCATCAAACTGAGTCTGCGCCCCCAACTCACAGCCAAAAAACTTAGTTGG 3832302 >seq4869 Length=19992947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| |||| ||||| | Sbjct 16670553 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 16670612 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670672 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||||||||| |||| | ||| || | || |||||| Sbjct 16670673 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670732 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| || || ||||| ||||| Sbjct 16670733 ATCCAGAAAGAGTCCACCTTGCATCTGGTG 16670762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || |||| || || ||||| ||| | || ||||| Sbjct 16670325 ATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGT 16670384 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 16670385 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670444 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | ||| || | || |||||| Sbjct 16670445 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670504 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| || || ||||| ||||| Sbjct 16670505 ATTCAGAAAGAGTCCACCTTGCATCTGGTG 16670534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817005993784