Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4869 102 7e-17 >seq4869 Length=19992947 Score = 102 bits (112), Expect = 7e-17 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| |||| ||| | || Sbjct 16670553 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 16670612 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| || ||||||||| | ||| || ||| Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670672 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||||| || || | ||| || ||||||||||| |||||| ||| || | ||||| Sbjct 16670673 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGC----ACACTGTCCGACTA 16670728 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| || || ||||| || ||||| ||||| || Sbjct 16670729 CAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 16670765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/225 (69%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || |||||||| || |||| || || ||||| ||| | || | Sbjct 16670317 GTTTACAGATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCG 16670376 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | | || || | | | || || ||||| || ||||||||| | ||| Sbjct 16670377 AGCCAAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCC 16670436 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATG 107723 || |||||||| | || | ||| || ||||||||||| |||||| ||| || Sbjct 16670437 CTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGC----ACACTG 16670492 Query 107724 GCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 | |||||||||||||| || ||||| || ||||| ||||| || Sbjct 16670493 TCCGACTACAACATTCAGAAAGAGTCCACCTTGCATCTGGTGCTG 16670537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853037911832