Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4882 105 9e-18 seq4866 105 9e-18 seq4883 104 3e-17 seq112 93.3 6e-14 seq4880 91.5 2e-13 >seq4882 Length=16759733 Score = 105 bits (116), Expect = 9e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11724 ACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTT 11782 || || |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||| Sbjct 7604831 ACTCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 7604772 Query 11783 CGATTCCCCGACGAGGAGGGAGGTT 11807 ||||||||||||| |||| ||| || Sbjct 7604771 CGATTCCCCGACGGGGAGAGAGATT 7604747 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7604825 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7604766 Query 8718 CCCGACGAGGAGCAGAG 8734 ||||||| |||| |||| Sbjct 7604765 CCCGACGGGGAG-AGAG 7604750 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7604754 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 7604813 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7604814 TACTAACGAGGA 7604825 >seq4866 Length=17973520 Score = 105 bits (116), Expect = 9e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||| ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||| Sbjct 17395649 TAAGCCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 17395590 Query 11781 TTCGATTCCCCGACGAGGAG 11800 ||||||||||||||| |||| Sbjct 17395589 TTCGATTCCCCGACGGGGAG 17395570 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 17394904 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 17394845 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 17394844 CCCGACGGGGAG 17394833 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 17395641 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 17395582 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 17395581 CCCGACGGGGAG 17395570 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 17394904 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 17394845 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 17394844 CCCGACGGGGAG 17394833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 17394833 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 17394892 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 17394893 TACTAACGAGGA 17394904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| Sbjct 17395567 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 17395626 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 17395627 CTATACTAACGAGGA 17395641 Score = 93.3 bits (102), Expect = 6e-14 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11720 TGTAAC--CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACC 11776 |||||| ||| |||||||||||||||||| ||||| ||| ||||| | ||| ||||| Sbjct 13398521 TGTAACAGCCACTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACC 13398580 Query 11777 GGGGTTCGATTCCCCGACGAGGAGG 11801 ||||||||||||||||||| ||||| Sbjct 13398581 GGGGTTCGATTCCCCGACGGGGAGG 13398605 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 13398533 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 13398592 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 13398593 CCCGACGGGGAG 13398604 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/84 (83%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGG----AGACC 11776 ||| ||| |||||||||||||||||||| |||| ||| ||||| | |||| ||||| Sbjct 17384737 TAAGCCACTCCTCGTTAGTATAGTGGTAAGTATCCCCACCTGTCACGCGGGGGCGAGACC 17384796 Query 11777 GGGGTTCGATTCCCCGACGAGGAG 11800 |||||||||||||| |||| |||| Sbjct 17384797 GGGGTTCGATTCCCTGACGGGGAG 17384820 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/76 (84%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGG----GAGACCGGGGTTCG 8713 ||||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||| Sbjct 17384745 TCCTCGTTAGTATAGTGGTAAGTATCCCCACCTGTCACGCGGGGGCGAGACCGGGGTTCG 17384804 Query 8714 ATTCCCCGACGAGGAG 8729 |||||| |||| |||| Sbjct 17384805 ATTCCCTGACGGGGAG 17384820 >seq4883 Length=37168685 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4094791 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4094732 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 4094731 CCCGACGGGGAG 4094720 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 4094794 CACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 4094735 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 4094734 TTCCCCGACGGGGAG 4094720 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4094720 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4094779 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4094780 TACTAACGAGGA 4094791 Score = 93.3 bits (102), Expect = 6e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708 ||| ||| ||||||||||||||||||| ||||| | || ||||| |||||||||||| Sbjct 11038475 ATGGCTTGCTCCTCGTTAGTATAGTGGTAAGTATCCGCGCCTGTCAG-CGGGAGACCGGG 11038533 Query 8709 GTTCGATTCCCCGACGAGGAG 8729 |||||||||||||||| |||| Sbjct 11038534 GTTCGATTCCCCGACGGGGAG 11038554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| | || ||||| ||||||||||||||||||||| Sbjct 11038484 TCCTCGTTAGTATAGTGGTAAGTATCCGCGCCTGTCAG-CGGGAGACCGGGGTTCGATTC 11038542 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 11038543 CCCGACGGGGAG 11038554 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| |||| || ||||| | |||| Sbjct 11038557 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCG-CTGACAGGCGCGGATACTTACCA 11038499 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 11038498 CTATACTAACGAGGA 11038484 >seq112 Length=35529 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| |||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||| Sbjct 447 CCCAATCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTC 388 Query 11784 GATTCCCCGACGAGGAGG 11801 |||||||||||| ||||| Sbjct 387 GATTCCCCGACGGGGAGG 370 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 442 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 383 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 382 CCCGACGGGGAG 371 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||| ||| | |||| ||| |||| | |||||| Sbjct 371 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 430 Query 139413 TACTAACGAGGATT 139426 |||||||||||||| Sbjct 431 TACTAACGAGGATT 444 >seq4880 Length=21574968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 18182061 TTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 18182002 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 18182001 CCCCGACGGGGAG 18181989 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 18182174 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 18182233 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 18182234 CCCGACGGGGAG 18182245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| |||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||| Sbjct 18182170 CCCA-TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTC 18182228 Query 11784 GATTCCCCGACGAGGAG 11800 |||||||||||| |||| Sbjct 18182229 GATTCCCCGACGGGGAG 18182245 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 18182060 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 18182001 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 18182000 CCCGACGGGGAG 18181989 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||| ||| | |||| ||| |||| | |||||| Sbjct 18182245 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 18182186 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 18182185 TACTAACGAGGAT 18182173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652804911182720