Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4869 145 7e-30 seq4867 141 9e-29 >seq4869 Length=19992947 Score = 145 bits (160), Expect = 7e-30 Identities = 159/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| ||| || ||| | | | || || |||| Sbjct 16670756 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCCAGCT 16670698 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| ||||||||| || || |||||||| ||||| ||||| Sbjct 16670697 GTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 16670638 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | ||||| |||||| | ||||| || |||| ||||| ||| ||||| | Sbjct 16670637 TTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTG 16670578 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||| ||||||||| || Sbjct 16670577 TCAAGGTCTTGACGAAGATCTGCATGCCT 16670549 Score = 113 bits (124), Expect = 4e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | |||||| || ||| ||||||| ||||| ||||| || | Sbjct 3228330 TGTACTCTACTATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGT 3228389 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||||| |||||| ||||||||||| |||||||| ||| |||||| || Sbjct 3228390 TGCTCTTGCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTC 3228441 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| ||| || ||| | | | || || |||| Sbjct 16670528 ATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCCAGCT 16670470 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 16670469 GTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 16670410 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| | ||||| || || | ||||| ||| || || | Sbjct 16670409 TGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGTCTTACCAG 16670350 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 16670349 TTAGGGTCTTGACAAAGATCTGCAT 16670325 >seq4867 Length=22528368 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || |||| | | | || || |||| Sbjct 1269204 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAGCT 1269146 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || ||| | || || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 1269145 GTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCT 1269086 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| | || ||||| || | |||| ||| ||||| | Sbjct 1269085 TGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAG 1269026 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || |||||||| |||||||| Sbjct 1269025 TCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || | || Sbjct 1268976 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCCAACT 1268918 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || ||| | || || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 1268917 GTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCT 1268858 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || || | |||| ||| ||||| | Sbjct 1268857 TAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAG 1268798 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 1268797 TCAGCGTCTTCACAAAGATCTGCAT 1268773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483391262989120